PPGR - Gene Detail

Basic Information

Gene ID	Lchi15031.g View in Genome Browser
Position	Scaffold611:886548-895417 (+) 8869bp
Gene Type	gene
Gene Description (Protein Product)	belongs to the protein kinase superfamily
Organism	Liriodendron chinense
Also AS	AT2G23070

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Lchi19241.g Plays a complex role in regulating the basal catalytic activity of the alpha subunit

Lchi15650.g Protein LHY-like isoform X1

Lchi15651.g Protein LHY-like isoform X1

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005730	nucleolus	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009987	cellular process	BP
GO:0010019	chloroplast-nucleus signaling pathway	BP
GO:0016301	kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0023052	signaling	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0040008	regulation of growth	BP
GO:0042752	regulation of circadian rhythm	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044237	cellular metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0048580	regulation of post-embryonic development	BP
GO:0048583	regulation of response to stimulus	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051239	regulation of multicellular organismal process	BP
GO:0051716	cellular response to stimulus	BP
GO:0065007	biological regulation	BP
GO:0070013	intracellular organelle lumen	CC
GO:2000026	regulation of multicellular organismal development	BP
GO:2000028	regulation of photoperiodism, flowering	BP
GO:2000241	regulation of reproductive process	BP

KEGG Term	Name	Description
map04712	Circadian rhythm - plant	-
map03008	Ribosome biogenesis in eukaryotes	Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.