Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Lchi18697.g
View in Genome Browser
Position
Scaffold281:2019941-2052827 (-)
32886bp
Gene Type
gene
Gene Description (Protein Product)
Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
Organism
Liriodendron chinense
Also AS AT4G35830

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Lchi30390.g Isocitrate dehydrogenase (NAD
Lchi33569.g Isocitrate dehydrogenase (NAD
Lchi20626.g Produces ATP from ADP in the presence of a proton gradient across the membrane
Regulatory gene
Lchi00798.g ZINC FINGER protein
Lchi01564.g transcription factor
Lchi03822.g General transcription factor IIE subunit

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003729 mRNA binding MF
GO:0003824 catalytic activity MF
GO:0003994 aconitate hydratase activity MF
GO:0005488 binding MF
GO:0005507 copper ion binding MF
GO:0005575 cellular_component CC
GO:0005576 extracellular region CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005773 vacuole CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0005911 cell-cell junction CC
GO:0006082 organic acid metabolic process BP
GO:0006101 citrate metabolic process BP
GO:0006102 isocitrate metabolic process BP
GO:0006950 response to stress BP
GO:0006970 response to osmotic stress BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009506 plasmodesma CC
GO:0009605 response to external stimulus BP
GO:0009628 response to abiotic stimulus BP
GO:0009651 response to salt stress BP
GO:0009987 cellular process BP
GO:0009991 response to extracellular stimulus BP
GO:0016020 membrane CC
GO:0016829 lyase activity MF
GO:0016835 carbon-oxygen lyase activity MF
GO:0016836 hydro-lyase activity MF
GO:0016999 antibiotic metabolic process BP
GO:0017144 xenobiotic metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0030054 cell junction CC
GO:0031667 response to nutrient levels BP
GO:0042594 response to starvation BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0048027 mRNA 5'-UTR binding MF
GO:0048046 apoplast CC
GO:0050896 response to stimulus BP
GO:0055044 symplast CC
GO:0071704 organic substance metabolic process BP
GO:0071944 cell periphery CC
GO:0072350 tricarboxylic acid metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:1901363 heterocyclic compound binding MF
GO:1990641 response to iron ion starvation BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00630 Glyoxylate and dicarboxylate metabolism -
map00020 Citrate cycle (TCA cycle) The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].