PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Lchi32815.g View in Genome Browser
Position	Scaffold1171:149468-177062 (+) 27594bp
Gene Type	gene
Gene Description (Protein Product)	Pre-mRNA-splicing factor
Organism	Liriodendron chinense
Also AS	AT5G28740

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Lchi33010.g pre-mRNA-processing factor Lchi34243.g U5 small nuclear ribonucleoprotein 200 kDa Lchi33316.g U5 small nuclear ribonucleoprotein 200 kDa
Regulatory gene	Lchi02489.g transcription factor Lchi05238.g Squamosa promoter-binding-like protein Lchi06729.g Squamosa promoter-binding-like protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.