Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Lchi33316.g
View in Genome Browser
Position
Scaffold2694:32206-77385 (+)
45179bp
Gene Type
gene
Gene Description (Protein Product)
U5 small nuclear ribonucleoprotein 200 kDa
Organism
Liriodendron chinense
Also AS AT1G20960

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Lchi34355.g Pre-mRNA-splicing factor
Lchi34020.g U4 U6.U5 tri-snRNP-associated protein
Lchi34974.g Splicing factor 3A subunit 2
Regulatory gene
Lchi00878.g transcription factor
Lchi00886.g (NAC) domain-containing protein
Lchi00930.g Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005911 cell-cell junction CC
GO:0009506 plasmodesma CC
GO:0030054 cell junction CC
GO:0055044 symplast CC
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.