Basic Information
Gene ID
MD10G1110500.v1.1
Position
Chr10:18186886-18187319 (-)
433bp
Gene Type
gene
Gene Description (Protein Product)
ER to Golgi vesicle-mediated transport
Organism
Also AS MD10G1110500AT2G47850

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
MD13G1230500.v1.1 Protein transport protein Sec24-like
MD15G1281700.v1.1 Protein transport protein Sec24-like
MD16G1235300.v1.1 Protein transport protein Sec24-like
Regulatory gene
MD00G1020600.v1.1 B3 domain-containing
MD00G1022000.v1.1 B3 domain-containing
MD00G1022100.v1.1 B3 domain-containing

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
GO Term Description GO Category
GO:0000122 negative regulation of transcription by RNA polymerase II BP
GO:0000165 MAPK cascade BP
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay BP
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening BP
GO:0000322 storage vacuole CC
GO:0000323 lytic vacuole CC
GO:0000324 fungal-type vacuole CC
GO:0000329 fungal-type vacuole membrane CC
GO:0000932 P-body CC
GO:0000956 nuclear-transcribed mRNA catabolic process BP
GO:0001817 regulation of cytokine production BP
GO:0001818 negative regulation of cytokine production BP
GO:0002237 response to molecule of bacterial origin BP
GO:0002376 immune system process BP
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I BP
GO:0002478 antigen processing and presentation of exogenous peptide antigen BP
GO:0002495 antigen processing and presentation of peptide antigen via MHC class II BP
GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II BP
GO:0002682 regulation of immune system process BP
GO:0002683 negative regulation of immune system process BP
GO:0002791 regulation of peptide secretion BP
GO:0002793 positive regulation of peptide secretion BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003727 single-stranded RNA binding MF
GO:0003729 mRNA binding MF
GO:0003730 mRNA 3'-UTR binding MF
GO:0005048 signal sequence binding MF
GO:0005215 transporter activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005774 vacuolar membrane CC
GO:0005783 endoplasmic reticulum CC
GO:0005789 endoplasmic reticulum membrane CC
GO:0005798 Golgi-associated vesicle CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006401 RNA catabolic process BP
GO:0006402 mRNA catabolic process BP
GO:0006403 RNA localization BP
GO:0006417 regulation of translation BP
GO:0006464 protein modification process BP
GO:0006468 protein phosphorylation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport BP
GO:0006900 vesicle budding from membrane BP
GO:0006901 vesicle coating BP
GO:0006903 vesicle targeting BP
GO:0006914 autophagy BP
GO:0006950 response to stress BP
GO:0006996 organelle organization BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008270 zinc ion binding MF
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009611 response to wounding BP
GO:0009617 response to bacterium BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009895 negative regulation of catabolic process BP
GO:0009896 positive regulation of catabolic process BP
GO:0009987 cellular process BP
GO:0009991 response to extracellular stimulus BP
GO:0010033 response to organic substance BP
GO:0010468 regulation of gene expression BP
GO:0010494 cytoplasmic stress granule CC
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010608 post-transcriptional regulation of gene expression BP
GO:0010628 positive regulation of gene expression BP
GO:0010629 negative regulation of gene expression BP
GO:0010837 regulation of keratinocyte proliferation BP
GO:0010869 obsolete regulation of receptor biosynthetic process BP
GO:0010941 regulation of cell death BP
GO:0012505 endomembrane system CC
GO:0012506 vesicle membrane CC
GO:0012507 ER to Golgi transport vesicle membrane CC
GO:0014070 response to organic cyclic compound BP
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0015931 nucleobase-containing compound transport BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016050 vesicle organization BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016192 vesicle-mediated transport BP
GO:0016236 macroautophagy BP
GO:0016310 phosphorylation BP
GO:0016441 post-transcriptional gene silencing BP
GO:0016458 obsolete gene silencing BP
GO:0017091 mRNA 3'-UTR AU-rich region binding MF
GO:0017148 negative regulation of translation BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019439 aromatic compound catabolic process BP
GO:0019538 protein metabolic process BP
GO:0019882 antigen processing and presentation BP
GO:0019884 antigen processing and presentation of exogenous antigen BP
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II BP
GO:0019899 enzyme binding MF
GO:0019900 kinase binding MF
GO:0019901 protein kinase binding MF
GO:0019955 cytokine binding MF
GO:0019956 chemokine binding MF
GO:0019957 C-C chemokine binding MF
GO:0022607 cellular component assembly BP
GO:0023014 signal transduction BP
GO:0023052 signaling BP
GO:0030117 membrane coat CC
GO:0030120 vesicle coat CC
GO:0030127 COPII vesicle coat CC
GO:0030133 transport vesicle CC
GO:0030134 COPII-coated ER to Golgi transport vesicle CC
GO:0030135 coated vesicle CC
GO:0030658 transport vesicle membrane CC
GO:0030659 cytoplasmic vesicle membrane CC
GO:0030660 Golgi-associated vesicle membrane CC
GO:0030662 coated vesicle membrane CC
GO:0030856 regulation of epithelial cell differentiation BP
GO:0031047 RNA-mediated gene silencing BP
GO:0031072 heat shock protein binding MF
GO:0031086 nuclear-transcribed mRNA catabolic process, deadenylation-independent decay BP
GO:0031090 organelle membrane CC
GO:0031098 stress-activated protein kinase signaling cascade BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031330 negative regulation of cellular catabolic process BP
GO:0031331 positive regulation of cellular catabolic process BP
GO:0031347 regulation of defense response BP
GO:0031348 negative regulation of defense response BP
GO:0031410 cytoplasmic vesicle CC
GO:0031667 response to nutrient levels BP
GO:0031960 response to corticosteroid BP
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0032101 regulation of response to external stimulus BP
GO:0032102 negative regulation of response to external stimulus BP
GO:0032268 regulation of protein metabolic process BP
GO:0032269 negative regulation of protein metabolic process BP
GO:0032496 response to lipopolysaccharide BP
GO:0032663 regulation of interleukin-2 production BP
GO:0032680 regulation of tumor necrosis factor production BP
GO:0032703 negative regulation of interleukin-2 production BP
GO:0032870 cellular response to hormone stimulus BP
GO:0032879 regulation of localization BP
GO:0032880 regulation of protein localization BP
GO:0032897 negative regulation of viral transcription BP
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0033218 amide binding MF
GO:0033554 cellular response to stress BP
GO:0033993 response to lipid BP
GO:0034097 response to cytokine BP
GO:0034248 regulation of amide metabolic process BP
GO:0034249 negative regulation of amide metabolic process BP
GO:0034612 response to tumor necrosis factor BP
GO:0034613 protein localization BP
GO:0034622 protein-containing complex assembly BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034655 nucleobase-containing compound catabolic process BP
GO:0035194 RNA-mediated post-transcriptional gene silencing BP
GO:0035195 miRNA-mediated gene silencing BP
GO:0035278 miRNA-mediated gene silencing by inhibition of translation BP
GO:0035459 vesicle cargo loading BP
GO:0035556 intracellular signal transduction BP
GO:0035770 ribonucleoprotein granule CC
GO:0035925 mRNA 3'-UTR AU-rich region binding MF
GO:0036211 protein modification process BP
GO:0036464 cytoplasmic ribonucleoprotein granule CC
GO:0038066 p38MAPK cascade BP
GO:0040029 epigenetic regulation of gene expression BP
GO:0040033 sRNA-mediated gene silencing BP
GO:0042035 regulation of cytokine production BP
GO:0042036 negative regulation of cytokine production BP
GO:0042127 regulation of cell population proliferation BP
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network CC
GO:0042221 response to chemical BP
GO:0042277 peptide binding MF
GO:0042592 homeostatic process BP
GO:0042594 response to starvation BP
GO:0042632 cholesterol homeostasis BP
GO:0042886 amide transport BP
GO:0042981 regulation of apoptotic process BP
GO:0043067 regulation of programmed cell death BP
GO:0043086 negative regulation of catalytic activity BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043412 macromolecule modification BP
GO:0043487 regulation of RNA stability BP
GO:0043488 regulation of mRNA stability BP
GO:0043489 RNA stabilization BP
GO:0043900 obsolete regulation of multi-organism process BP
GO:0043901 obsolete negative regulation of multi-organism process BP
GO:0043903 regulation of biological process involved in symbiotic interaction BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044092 negative regulation of molecular function BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044267 protein metabolic process BP
GO:0044270 cellular nitrogen compound catabolic process BP
GO:0044344 cellular response to fibroblast growth factor stimulus BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044432 obsolete endoplasmic reticulum part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044437 obsolete vacuolar part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045076 regulation of interleukin-2 production BP
GO:0045085 negative regulation of interleukin-2 production BP
GO:0045184 establishment of protein localization BP
GO:0045595 regulation of cell differentiation BP
GO:0045596 negative regulation of cell differentiation BP
GO:0045597 positive regulation of cell differentiation BP
GO:0045598 regulation of fat cell differentiation BP
GO:0045600 positive regulation of fat cell differentiation BP
GO:0045604 regulation of epidermal cell differentiation BP
GO:0045616 regulation of keratinocyte differentiation BP
GO:0045637 regulation of myeloid cell differentiation BP
GO:0045638 negative regulation of myeloid cell differentiation BP
GO:0045646 regulation of erythrocyte differentiation BP
GO:0045647 negative regulation of erythrocyte differentiation BP
GO:0045682 regulation of epidermis development BP
GO:0045714 obsolete regulation of low-density lipoprotein particle receptor biosynthetic process BP
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0045935 positive regulation of nucleobase-containing compound metabolic process BP
GO:0045974 regulation of translation, ncRNA-mediated BP
GO:0046483 heterocycle metabolic process BP
GO:0046700 heterocycle catabolic process BP
GO:0046782 regulation of viral transcription BP
GO:0046872 metal ion binding MF
GO:0046907 intracellular transport BP
GO:0046914 transition metal ion binding MF
GO:0048002 antigen processing and presentation of peptide antigen BP
GO:0048193 Golgi vesicle transport BP
GO:0048194 Golgi vesicle budding BP
GO:0048199 vesicle targeting, to, from or within Golgi BP
GO:0048207 vesicle targeting, rough ER to cis-Golgi BP
GO:0048208 COPII vesicle coating BP
GO:0048255 mRNA stabilization BP
GO:0048475 coated membrane CC
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048525 negative regulation of viral process BP
GO:0048545 response to steroid hormone BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048878 chemical homeostasis BP
GO:0050657 nucleic acid transport BP
GO:0050658 RNA transport BP
GO:0050678 regulation of epithelial cell proliferation BP
GO:0050708 regulation of protein secretion BP
GO:0050714 positive regulation of protein secretion BP
GO:0050727 regulation of inflammatory response BP
GO:0050728 negative regulation of inflammatory response BP
GO:0050779 RNA destabilization BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050792 regulation of viral process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051028 mRNA transport BP
GO:0051046 regulation of secretion BP
GO:0051047 positive regulation of secretion BP
GO:0051049 regulation of transport BP
GO:0051050 positive regulation of transport BP
GO:0051093 negative regulation of developmental process BP
GO:0051094 positive regulation of developmental process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051179 localization BP
GO:0051222 positive regulation of protein transport BP
GO:0051223 regulation of protein transport BP
GO:0051234 establishment of localization BP
GO:0051236 establishment of RNA localization BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051241 negative regulation of multicellular organismal process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051248 negative regulation of protein metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051254 positive regulation of RNA metabolic process BP
GO:0051338 regulation of transferase activity BP
GO:0051348 negative regulation of transferase activity BP
GO:0051384 response to glucocorticoid BP
GO:0051403 stress-activated MAPK cascade BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051648 vesicle localization BP
GO:0051649 establishment of localization in cell BP
GO:0051650 establishment of vesicle localization BP
GO:0051656 establishment of organelle localization BP
GO:0051668 localization within membrane BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0051716 cellular response to stimulus BP
GO:0055088 lipid homeostasis BP
GO:0055092 sterol homeostasis BP
GO:0060147 regulation of post-transcriptional gene silencing BP
GO:0060148 positive regulation of post-transcriptional gene silencing BP
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening BP
GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060341 regulation of cellular localization BP
GO:0060964 regulation of miRNA-mediated gene silencing BP
GO:0060966 regulation of gene silencing by RNA BP
GO:0060968 obsolete regulation of gene silencing BP
GO:0061013 regulation of mRNA catabolic process BP
GO:0061014 positive regulation of mRNA catabolic process BP
GO:0061024 membrane organization BP
GO:0061157 mRNA destabilization BP
GO:0061158 3'-UTR-mediated mRNA destabilization BP
GO:0061919 process utilizing autophagic mechanism BP
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0065009 regulation of molecular function BP
GO:0070063 RNA polymerase binding MF
GO:0070201 regulation of establishment of protein localization BP
GO:0070727 cellular macromolecule localization BP
GO:0070848 response to growth factor BP
GO:0070849 response to epidermal growth factor BP
GO:0070887 cellular response to chemical stimulus BP
GO:0070935 3'-UTR-mediated mRNA stabilization BP
GO:0070971 endoplasmic reticulum exit site CC
GO:0071216 cellular response to biotic stimulus BP
GO:0071219 cellular response to molecule of bacterial origin BP
GO:0071222 cellular response to lipopolysaccharide BP
GO:0071310 cellular response to organic substance BP
GO:0071345 cellular response to cytokine stimulus BP
GO:0071356 cellular response to tumor necrosis factor BP
GO:0071363 cellular response to growth factor stimulus BP
GO:0071364 cellular response to epidermal growth factor stimulus BP
GO:0071383 cellular response to steroid hormone stimulus BP
GO:0071384 cellular response to corticosteroid stimulus BP
GO:0071385 cellular response to glucocorticoid stimulus BP
GO:0071396 cellular response to lipid BP
GO:0071407 cellular response to organic cyclic compound BP
GO:0071495 cellular response to endogenous stimulus BP
GO:0071702 organic substance transport BP
GO:0071704 organic substance metabolic process BP
GO:0071705 nitrogen compound transport BP
GO:0071774 response to fibroblast growth factor BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071889 14-3-3 protein binding MF
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0090087 regulation of peptide transport BP
GO:0090110 COPII-coated vesicle cargo loading BP
GO:0090114 COPII-coated vesicle budding BP
GO:0090304 nucleic acid metabolic process BP
GO:0097011 cellular response to granulocyte macrophage colony-stimulating factor stimulus BP
GO:0097012 response to granulocyte macrophage colony-stimulating factor BP
GO:0097159 organic cyclic compound binding MF
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098796 membrane protein complex CC
GO:0098805 membrane CC
GO:0098827 endoplasmic reticulum subcompartment CC
GO:0098852 lytic vacuole membrane CC
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay BP
GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901361 organic cyclic compound catabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1901700 response to oxygen-containing compound BP
GO:1901701 cellular response to oxygen-containing compound BP
GO:1901834 regulation of deadenylation-independent decapping of nuclear-transcribed mRNA BP
GO:1901835 positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA BP
GO:1902172 regulation of keratinocyte apoptotic process BP
GO:1902369 negative regulation of RNA catabolic process BP
GO:1902373 negative regulation of mRNA catabolic process BP
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1903311 regulation of mRNA metabolic process BP
GO:1903312 negative regulation of mRNA metabolic process BP
GO:1903313 positive regulation of mRNA metabolic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1903530 regulation of secretion by cell BP
GO:1903532 positive regulation of secretion by cell BP
GO:1903555 regulation of tumor necrosis factor superfamily cytokine production BP
GO:1903706 regulation of hemopoiesis BP
GO:1903707 negative regulation of hemopoiesis BP
GO:1904035 regulation of epithelial cell apoptotic process BP
GO:1904245 regulation of polynucleotide adenylyltransferase activity BP
GO:1904246 negative regulation of polynucleotide adenylyltransferase activity BP
GO:1904580 regulation of intracellular mRNA localization BP
GO:1904582 positive regulation of intracellular mRNA localization BP
GO:1904951 positive regulation of establishment of protein localization BP
GO:1990904 ribonucleoprotein complex CC
GO:2000026 regulation of multicellular organismal development BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2000637 positive regulation of miRNA-mediated gene silencing BP
GO:2001141 regulation of RNA biosynthetic process BP
KEGG Term Name Description
map04141 Protein processing in endoplasmic reticulum The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.