PPGR - Gene Detail

Basic Information

Gene ID	MD11G1159400.v1.1 View in Genome Browser
Position	Chr11:15587775-15594185 (+) 6410bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the histone deacetylase family. HD Type 1 subfamily
Organism	Malus domestica
Also AS	MD11G1159400AT3G44680

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

MD15G1231100.v1.1 Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family

MD15G1032300.v1.1 Sin3 binding region of histone deacetylase complex subunit SAP30

MD12G1139800.v1.1 Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin; limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation; DNA repair; DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones; also called histone code; and nucleosome remodeling

Regulatory gene

MD00G1020600.v1.1 B3 domain-containing

MD00G1022000.v1.1 B3 domain-containing

MD00G1022100.v1.1 B3 domain-containing

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0006325	chromatin organization	BP
GO:0006464	protein modification process	BP
GO:0006476	protein deacetylation	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009987	cellular process	BP
GO:0010029	regulation of seed germination	BP
GO:0010187	negative regulation of seed germination	BP
GO:0016043	cellular component organization	BP
GO:0016569	obsolete covalent chromatin modification	BP
GO:0016570	histone modification	BP
GO:0016575	histone deacetylation	BP
GO:0019538	protein metabolic process	BP
GO:0035601	protein deacylation	BP
GO:0036211	protein modification process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043412	macromolecule modification	BP
GO:0043565	sequence-specific DNA binding	MF
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0048519	negative regulation of biological process	BP
GO:0048580	regulation of post-embryonic development	BP
GO:0048581	negative regulation of post-embryonic development	BP
GO:0048831	regulation of shoot system development	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0051093	negative regulation of developmental process	BP
GO:0051239	regulation of multicellular organismal process	BP
GO:0051241	negative regulation of multicellular organismal process	BP
GO:0051276	chromosome organization	BP
GO:0065007	biological regulation	BP
GO:0070932	histone H3 deacetylation	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0097159	organic cyclic compound binding	MF
GO:0098732	macromolecule deacylation	BP
GO:1900055	regulation of leaf senescence	BP
GO:1900140	regulation of seedling development	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1990619	histone H3-K9 deacetylation	BP
GO:2000024	regulation of leaf development	BP
GO:2000026	regulation of multicellular organismal development	BP