Basic Information
Gene ID
Position
hic_scaffold_12:41502084-41506961 (-)
4877bp
Gene Type
gene
Gene Description (Protein Product)
"RNA recognition motif. (a.k.a. RRM
Organism
Also AS AT3G55460

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PH02Gene49336 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PH02Gene42895 Zinc knuckle
PH02Gene51201 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Regulatory gene
PH02Gene00185 GAGA binding protein-like family
PH02Gene00602 No apical meristem (NAM) protein
PH02Gene00821 NAC domain-containing protein 94

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.