Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PH02Gene46333
View in Genome Browser
Position
hic_scaffold_4:35712629-35725744 (+)
13115bp
Gene Type
gene
Gene Description (Protein Product)
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
Organism
Phyllostachys edulis
Also AS AT2G40360

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PH02Gene49232 Dip2/Utp12 Family
PH02Gene47994 Belongs to the DEAD box helicase family
PH02Gene48057 Belongs to the DEAD box helicase family
Regulatory gene
PH02Gene00185 GAGA binding protein-like family
PH02Gene00239 zinc finger
PH02Gene00304 Dof domain, zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) BP
GO:0000470 maturation of LSU-rRNA BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005730 nucleolus CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006364 rRNA processing BP
GO:0006396 RNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0007276 gamete generation BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0016070 RNA metabolic process BP
GO:0016072 rRNA metabolic process BP
GO:0019953 sexual reproduction BP
GO:0022414 reproductive process BP
GO:0022613 ribonucleoprotein complex biogenesis BP
GO:0030684 preribosome CC
GO:0030686 90S preribosome CC
GO:0030687 preribosome, large subunit precursor CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032501 multicellular organismal process BP
GO:0032504 multicellular organism reproduction BP
GO:0032991 protein-containing complex CC
GO:0034470 ncRNA processing BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034660 ncRNA metabolic process BP
GO:0042254 ribosome biogenesis BP
GO:0042273 ribosomal large subunit biogenesis BP
GO:0043021 ribonucleoprotein complex binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044452 obsolete nucleolar part CC
GO:0044464 obsolete cell part CC
GO:0044703 multi-organism reproductive process BP
GO:0044877 protein-containing complex binding MF
GO:0046483 heterocycle metabolic process BP
GO:0048609 multicellular organismal reproductive process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051302 regulation of cell division BP
GO:0051704 obsolete multi-organism process BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070545 PeBoW complex CC
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1990904 ribonucleoprotein complex CC