PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	PH02Gene46975 View in Genome Browser
Position	hic_scaffold_20:14159045-14161451 (+) 2406bp
Gene Type	gene
Gene Description (Protein Product)	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Organism	Phyllostachys edulis
Also AS	AT2G01290

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	PH02Gene51251 Ribulose-phosphate 3 epimerase family PH02Gene51261 Transketolase, thiamine diphosphate binding domain PH02Gene47348 Belongs to the phosphohexose mutase family
Regulatory gene	PH02Gene00185 GAGA binding protein-like family PH02Gene00239 zinc finger PH02Gene00552 Zinc-finger double-stranded RNA-binding

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000271	polysaccharide biosynthetic process	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004751	ribose-5-phosphate isomerase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0005975	carbohydrate metabolic process	BP
GO:0005976	polysaccharide metabolic process	BP
GO:0006073	cellular glucan metabolic process	BP
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006213	pyrimidine nucleoside metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008219	cell death	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009116	nucleoside metabolic process	BP
GO:0009119	ribonucleoside metabolic process	BP
GO:0009163	nucleoside biosynthetic process	BP
GO:0009250	glucan biosynthetic process	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009791	post-embryonic development	BP
GO:0009987	cellular process	BP
GO:0010228	vegetative to reproductive phase transition of meristem	BP
GO:0016051	carbohydrate biosynthetic process	BP
GO:0016853	isomerase activity	MF
GO:0016860	intramolecular oxidoreductase activity	MF
GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0022414	reproductive process	BP
GO:0030243	cellulose metabolic process	BP
GO:0030244	cellulose biosynthetic process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0033692	cellular polysaccharide biosynthetic process	BP
GO:0034404	nucleobase-containing small molecule biosynthetic process	BP
GO:0034637	cellular carbohydrate biosynthetic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0042455	ribonucleoside biosynthetic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0044042	glucan metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044262	cellular carbohydrate metabolic process	BP
GO:0044264	cellular polysaccharide metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046108	uridine metabolic process	BP
GO:0046109	uridine biosynthetic process	BP
GO:0046131	pyrimidine ribonucleoside metabolic process	BP
GO:0046132	pyrimidine ribonucleoside biosynthetic process	BP
GO:0046134	pyrimidine nucleoside biosynthetic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048608	reproductive structure development	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0050896	response to stimulus	BP
GO:0051273	beta-glucan metabolic process	BP
GO:0051274	beta-glucan biosynthetic process	BP
GO:0055086	nucleobase-containing small molecule metabolic process	BP
GO:0061458	reproductive system development	BP
GO:0071704	organic substance metabolic process	BP
GO:0072527	pyrimidine-containing compound metabolic process	BP
GO:0072528	pyrimidine-containing compound biosynthetic process	BP
GO:0080167	response to karrikin	BP
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901137	carbohydrate derivative biosynthetic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901657	glycosyl compound metabolic process	BP
GO:1901659	glycosyl compound biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00710	Carbon fixation in photosynthetic organisms	-
map00030	Pentose phosphate pathway	The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].