Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pt2G41190
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Position
chr2:1303116176-1303117398 (-)
1222bp
Gene Type
gene
Gene Description (Protein Product)
116 kDa U5 small nuclear ribonucleoprotein
Organism
Pinus tabuliformis
Also AS AT1G06220

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pt4G28080 Protein CWC15 homolog
PtJG35860 Zinc finger matrin-type protein
PtJG35800 Zinc finger matrin-type protein
Regulatory gene
Pt0G10630 Transcription factor
Pt0G32790 transcription factor bHLH041
Pt0G38870 Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0003006 developmental process involved in reproduction BP
GO:0005575 cellular_component CC
GO:0005618 cell wall CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005681 spliceosomal complex CC
GO:0005684 U2-type spliceosomal complex CC
GO:0005730 nucleolus CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0005911 cell-cell junction CC
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0009506 plasmodesma CC
GO:0009790 embryo development BP
GO:0009791 post-embryonic development BP
GO:0009793 embryo development ending in seed dormancy BP
GO:0009908 flower development BP
GO:0010154 fruit development BP
GO:0015030 Cajal body CC
GO:0016020 membrane CC
GO:0016604 nuclear body CC
GO:0016607 nuclear speck CC
GO:0022414 reproductive process BP
GO:0030054 cell junction CC
GO:0030312 external encapsulating structure CC
GO:0030532 small nuclear ribonucleoprotein complex CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032991 protein-containing complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043900 obsolete regulation of multi-organism process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0045595 regulation of cell differentiation BP
GO:0045694 regulation of embryo sac egg cell differentiation BP
GO:0046540 U4/U6 x U5 tri-snRNP complex CC
GO:0048316 seed development BP
GO:0048367 shoot system development BP
GO:0048437 floral organ development BP
GO:0048608 reproductive structure development BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0055044 symplast CC
GO:0061458 reproductive system development BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0071007 U2-type catalytic step 2 spliceosome CC
GO:0071013 catalytic step 2 spliceosome CC
GO:0071944 cell periphery CC
GO:0090567 reproductive shoot system development BP
GO:0097525 spliceosomal snRNP complex CC
GO:0097526 spliceosomal tri-snRNP complex CC
GO:0099402 plant organ development BP
GO:0120114 Sm-like protein family complex CC
GO:1902494 catalytic complex CC
GO:1990904 ribonucleoprotein complex CC
GO:2000026 regulation of multicellular organismal development BP
GO:2000241 regulation of reproductive process BP
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.