Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pt4G43020
View in Genome Browser
Position
chr4:1447413164-1447523525 (-)
110361bp
Gene Type
gene
Gene Description (Protein Product)
DNA methyltransferase 1-associated protein 1
Organism
Pinus tabuliformis
Also AS AT2G47210

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PtXG20580 HIT zinc finger
PtXG20580
PtXG15210 Transcription initiation factor TFIID subunit
Regulatory gene
Pt0G30790 Myb family transcription factor
Pt2G38070 transcription factor
Pt2G44150 PHR1-LIKE 1-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000122 negative regulation of transcription by RNA polymerase II BP
GO:0000123 histone acetyltransferase complex CC
GO:0000228 nuclear chromosome CC
GO:0000785 chromatin CC
GO:0000790 chromatin CC
GO:0000812 Swr1 complex CC
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific MF
GO:0001085 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0001103 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0003674 molecular_function MF
GO:0003700 DNA-binding transcription factor activity MF
GO:0003712 transcription coregulator activity MF
GO:0003714 transcription corepressor activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005694 chromosome CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006304 DNA modification BP
GO:0006305 DNA alkylation BP
GO:0006306 DNA methylation BP
GO:0006325 chromatin organization BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006464 protein modification process BP
GO:0006473 protein acetylation BP
GO:0006475 internal protein amino acid acetylation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0008134 transcription factor binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0016043 cellular component organization BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016573 histone acetylation BP
GO:0018193 peptidyl-amino acid modification BP
GO:0018205 peptidyl-lysine modification BP
GO:0018393 internal peptidyl-lysine acetylation BP
GO:0018394 peptidyl-lysine acetylation BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0031248 protein acetyltransferase complex CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032259 methylation BP
GO:0032386 regulation of intracellular transport BP
GO:0032388 positive regulation of intracellular transport BP
GO:0032879 regulation of localization BP
GO:0032880 regulation of protein localization BP
GO:0032991 protein-containing complex CC
GO:0033157 regulation of intracellular protein transport BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0035267 NuA4 histone acetyltransferase complex CC
GO:0036211 protein modification process BP
GO:0042306 regulation of protein import into nucleus BP
GO:0042307 positive regulation of protein import into nucleus BP
GO:0043170 macromolecule metabolic process BP
GO:0043189 H4/H2A histone acetyltransferase complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0043414 macromolecule methylation BP
GO:0043543 protein acylation BP
GO:0043967 histone H4 acetylation BP
GO:0043968 histone H2A acetylation BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0044728 obsolete DNA methylation or demethylation BP
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046822 regulation of nucleocytoplasmic transport BP
GO:0046824 positive regulation of nucleocytoplasmic transport BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051049 regulation of transport BP
GO:0051050 positive regulation of transport BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051222 positive regulation of protein transport BP
GO:0051223 regulation of protein transport BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060341 regulation of cellular localization BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070201 regulation of establishment of protein localization BP
GO:0070491 DNA-binding transcription factor binding MF
GO:0070603 SWI/SNF superfamily-type complex CC
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090087 regulation of peptide transport BP
GO:0090304 nucleic acid metabolic process BP
GO:0090316 positive regulation of intracellular protein transport BP
GO:0097346 INO80-type complex CC
GO:0140110 transcription regulator activity MF
GO:1900180 regulation of protein localization to nucleus BP
GO:1900182 positive regulation of protein localization to nucleus BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1902493 acetyltransferase complex CC
GO:1902494 catalytic complex CC
GO:1902562 H4 histone acetyltransferase complex CC
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1903827 regulation of protein localization BP
GO:1903829 positive regulation of protein localization BP
GO:1904589 regulation of protein import BP
GO:1904591 positive regulation of protein import BP
GO:1904949 ATPase complex CC
GO:1904951 positive regulation of establishment of protein localization BP
GO:1990234 transferase complex CC
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP