Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PtXG20580
View in Genome Browser
Position
chr10:600627707-600908214 (-)
280507bp
Gene Type
gene
Gene Description (Protein Product)
HIT zinc finger
Organism
Pinus tabuliformis
Also AS AT5G37055

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PtXG34940 Belongs to the actin family
PtXG24510 Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
PtXG20580 HIT zinc finger
Regulatory gene
Pt0G01630 dof zinc finger protein
Pt0G07980 dof zinc finger protein
Pt1G12460 Protein BASIC PENTACYSTEINE6-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000228 nuclear chromosome CC
GO:0000785 chromatin CC
GO:0000790 chromatin CC
GO:0000812 Swr1 complex CC
GO:0003674 molecular_function MF
GO:0003682 chromatin binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005694 chromosome CC
GO:0006325 chromatin organization BP
GO:0006338 chromatin remodeling BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009617 response to bacterium BP
GO:0009909 regulation of flower development BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0019222 regulation of metabolic process BP
GO:0019899 enzyme binding MF
GO:0031056 regulation of histone modification BP
GO:0031063 regulation of histone deacetylation BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031399 regulation of protein modification process BP
GO:0031491 nucleosome binding MF
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032268 regulation of protein metabolic process BP
GO:0032991 protein-containing complex CC
GO:0033043 regulation of organelle organization BP
GO:0033044 regulation of chromosome organization BP
GO:0034728 nucleosome organization BP
GO:0040008 regulation of growth BP
GO:0042742 defense response to bacterium BP
GO:0042802 identical protein binding MF
GO:0042826 histone deacetylase binding MF
GO:0043044 chromatin remodeling BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043486 obsolete histone exchange BP
GO:0043933 protein-containing complex organization BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0044877 protein-containing complex binding MF
GO:0048580 regulation of post-embryonic development BP
GO:0048638 regulation of developmental growth BP
GO:0048831 regulation of shoot system development BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051128 regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051276 chromosome organization BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070603 SWI/SNF superfamily-type complex CC
GO:0071824 protein-DNA complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090311 regulation of protein deacetylation BP
GO:0097346 INO80-type complex CC
GO:0098542 defense response to other organism BP
GO:1902275 regulation of chromatin organization BP
GO:1902494 catalytic complex CC
GO:1904949 ATPase complex CC
GO:2000026 regulation of multicellular organismal development BP
GO:2000241 regulation of reproductive process BP