PPGR - Gene Detail

Gene ID	Pt7G39700 View in Genome Browser
Position	chr7:1351102189-1351116941 (+) 14752bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Organism	Pinus tabuliformis
Also AS	AT4G19020

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	Pt8G05880 Tudor PWWP MBT superfamily protein PtJG54050 Chromo domain-containing protein PtJG54050
Regulatory gene	Pt1G48760 Zinc-finger homeodomain protein Pt1G48770 Zinc-finger homeodomain protein Pt2G30020 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006304	DNA modification	BP
GO:0006305	DNA alkylation	BP
GO:0006306	DNA methylation	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009292	horizontal gene transfer	BP
GO:0009294	DNA-mediated transformation	BP
GO:0009987	cellular process	BP
GO:0010216	negative regulation of gene expression via chromosomal DNA cytosine methylation	BP
GO:0032259	methylation	BP
GO:0032776	DNA methylation on cytosine	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043412	macromolecule modification	BP
GO:0043414	macromolecule methylation	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044728	obsolete DNA methylation or demethylation	BP
GO:0044764	obsolete multi-organism cellular process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0051704	obsolete multi-organism process	BP
GO:0071704	organic substance metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00270	Cysteine and methionine metabolism	Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].