Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PtXG01430
View in Genome Browser
Position
chr10:27895403-28014047 (+)
118644bp
Gene Type
gene
Gene Description (Protein Product)
homogentisate phytyltransferase 1
Organism
Pinus tabuliformis
Also AS AT2G18950

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PtXG53600 May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway
PtXG53610 May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway
PtXG01790 COP9 signalosome complex subunit
Regulatory gene
Pt0G01630 dof zinc finger protein
Pt0G07980 dof zinc finger protein
Pt0G20740 (No apical meristem) protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004659 prenyltransferase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0006082 organic acid metabolic process BP
GO:0006629 lipid metabolic process BP
GO:0006631 fatty acid metabolic process BP
GO:0006633 fatty acid biosynthetic process BP
GO:0006636 unsaturated fatty acid biosynthetic process BP
GO:0006766 vitamin metabolic process BP
GO:0006775 fat-soluble vitamin metabolic process BP
GO:0006810 transport BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008610 lipid biosynthetic process BP
GO:0008643 carbohydrate transport BP
GO:0009058 biosynthetic process BP
GO:0009110 vitamin biosynthetic process BP
GO:0009266 response to temperature stimulus BP
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009628 response to abiotic stimulus BP
GO:0009915 phloem sucrose loading BP
GO:0009987 cellular process BP
GO:0010176 homogentisate phytyltransferase activity MF
GO:0010189 vitamin E biosynthetic process BP
GO:0010232 vascular transport BP
GO:0010233 phloem transport BP
GO:0010354 homogentisate prenyltransferase activity MF
GO:0015766 disaccharide transport BP
GO:0015770 sucrose transport BP
GO:0015772 oligosaccharide transport BP
GO:0016043 cellular component organization BP
GO:0016053 organic acid biosynthetic process BP
GO:0016740 transferase activity MF
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups MF
GO:0018130 heterocycle biosynthetic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0031347 regulation of defense response BP
GO:0032501 multicellular organismal process BP
GO:0032787 monocarboxylic acid metabolic process BP
GO:0033559 unsaturated fatty acid metabolic process BP
GO:0042360 vitamin E metabolic process BP
GO:0042362 fat-soluble vitamin biosynthetic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044255 cellular lipid metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0045229 external encapsulating structure organization BP
GO:0046394 carboxylic acid biosynthetic process BP
GO:0046483 heterocycle metabolic process BP
GO:0048583 regulation of response to stimulus BP
GO:0050789 regulation of biological process BP
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0065007 biological regulation BP
GO:0071554 cell wall organization or biogenesis BP
GO:0071555 cell wall organization BP
GO:0071702 organic substance transport BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072330 monocarboxylic acid biosynthetic process BP
GO:0080134 regulation of response to stress BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901615 organic hydroxy compound metabolic process BP
GO:1901617 organic hydroxy compound biosynthetic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00130 Ubiquinone and other terpenoid-quinone biosynthesis Ubiquinone (UQ), also called coenzyme Q, and plastoquinone (PQ) are electron carriers in oxidative phosphorylation and photosynthesis, respectively. The quinoid nucleus of ubiquinone is derived from the shikimate pathway; 4-hydroxybenzoate is directly formed from chorismate in bacteria, while it can be formed from either chorismate or tyrosine in yeast. The following biosynthesis of terpenoid moiety involves reactions of prenylation, decarboxylation, and three hydroxylations alternating with three methylations. The order of these reactions are somewhat different between bacteria and yeast. Phylloquinone (vitamin K1), menaquinone (vitamin K2), and tocopherol (vitamin E) are fat-soluble vitamins. Phylloquinone is a compound present in all photosynthetic plants serving as a cofactor for photosystem I-mediated electron transport. Menaquinone is an obligatory component of the electron-transfer pathway in bacteria.