Basic Information
Gene ID
Position
chr10:590727869-591067036 (-)
339167bp
Gene Type
gene
Gene Description (Protein Product)
ATP-dependent DNA helicase CHR12
Organism
Also AS AT3G06010

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PtXG20090 ATP-dependent DNA helicase CHR12
PtXG30880 DNA excision repair protein ERCC-6-like
Regulatory gene
Pt0G01630 dof zinc finger protein
Pt0G07980 dof zinc finger protein
Pt1G66310 Dof domain, zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000182 rDNA binding MF
GO:0000228 nuclear chromosome CC
GO:0000785 chromatin CC
GO:0000790 chromatin CC
GO:0000902 cell morphogenesis BP
GO:0001085 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0001101 response to acid chemical BP
GO:0001102 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003682 chromatin binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003824 catalytic activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005694 chromosome CC
GO:0005975 carbohydrate metabolic process BP
GO:0005984 disaccharide metabolic process BP
GO:0005985 sucrose metabolic process BP
GO:0005987 sucrose catabolic process BP
GO:0006066 alcohol metabolic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006260 DNA replication BP
GO:0006261 DNA-templated DNA replication BP
GO:0006281 DNA repair BP
GO:0006302 double-strand break repair BP
GO:0006310 DNA recombination BP
GO:0006325 chromatin organization BP
GO:0006338 chromatin remodeling BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006970 response to osmotic stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0006996 organelle organization BP
GO:0007154 cell communication BP
GO:0007275 multicellular organism development BP
GO:0008094 ATP-dependent activity, acting on DNA MF
GO:0008134 transcription factor binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009266 response to temperature stimulus BP
GO:0009267 cellular response to starvation BP
GO:0009311 oligosaccharide metabolic process BP
GO:0009313 oligosaccharide catabolic process BP
GO:0009408 response to heat BP
GO:0009414 response to water deprivation BP
GO:0009415 response to water BP
GO:0009605 response to external stimulus BP
GO:0009628 response to abiotic stimulus BP
GO:0009651 response to salt stress BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009791 post-embryonic development BP
GO:0009826 unidimensional cell growth BP
GO:0009888 tissue development BP
GO:0009889 regulation of biosynthetic process BP
GO:0009891 positive regulation of biosynthetic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0009991 response to extracellular stimulus BP
GO:0010015 root morphogenesis BP
GO:0010035 response to inorganic substance BP
GO:0010073 meristem maintenance BP
GO:0010074 maintenance of meristem identity BP
GO:0010078 maintenance of root meristem identity BP
GO:0010154 fruit development BP
GO:0010162 seed dormancy process BP
GO:0010231 maintenance of seed dormancy BP
GO:0010431 seed maturation BP
GO:0010453 regulation of cell fate commitment BP
GO:0010455 positive regulation of cell fate commitment BP
GO:0010468 regulation of gene expression BP
GO:0010492 maintenance of shoot apical meristem identity BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010557 positive regulation of macromolecule biosynthetic process BP
GO:0010570 regulation of filamentous growth BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010628 positive regulation of gene expression BP
GO:0010810 regulation of cell-substrate adhesion BP
GO:0010811 positive regulation of cell-substrate adhesion BP
GO:0016043 cellular component organization BP
GO:0016049 cell growth BP
GO:0016052 carbohydrate catabolic process BP
GO:0016462 pyrophosphatase activity MF
GO:0016514 SWI/SNF complex CC
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0016887 ATP hydrolysis activity MF
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019827 stem cell population maintenance BP
GO:0021700 developmental maturation BP
GO:0022414 reproductive process BP
GO:0022611 dormancy process BP
GO:0022622 root system development BP
GO:0030155 regulation of cell adhesion BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031328 positive regulation of cellular biosynthetic process BP
GO:0031490 chromatin DNA binding MF
GO:0031491 nucleosome binding MF
GO:0031492 nucleosomal DNA binding MF
GO:0031494 regulation of mating type switching BP
GO:0031496 positive regulation of mating type switching BP
GO:0031667 response to nutrient levels BP
GO:0031668 cellular response to extracellular stimulus BP
GO:0031669 cellular response to nutrient levels BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032504 multicellular organism reproduction BP
GO:0032989 cellular component morphogenesis BP
GO:0032991 protein-containing complex CC
GO:0033554 cellular response to stress BP
GO:0033613 DNA-binding transcription factor binding MF
GO:0034198 cellular response to amino acid starvation BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034728 nucleosome organization BP
GO:0036003 positive regulation of transcription from RNA polymerase II promoter in response to stress BP
GO:0040007 growth BP
GO:0040008 regulation of growth BP
GO:0042148 strand invasion BP
GO:0042221 response to chemical BP
GO:0042393 histone binding MF
GO:0042594 response to starvation BP
GO:0042623 ATP hydrolysis activity MF
GO:0042766 obsolete nucleosome mobilization BP
GO:0043044 chromatin remodeling BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043565 sequence-specific DNA binding MF
GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress BP
GO:0043620 regulation of DNA-templated transcription in response to stress BP
GO:0043900 obsolete regulation of multi-organism process BP
GO:0043902 obsolete positive regulation of multi-organism process BP
GO:0043933 protein-containing complex organization BP
GO:0044107 cellular alcohol metabolic process BP
GO:0044109 cellular alcohol catabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044262 cellular carbohydrate metabolic process BP
GO:0044275 cellular carbohydrate catabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044282 small molecule catabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0044877 protein-containing complex binding MF
GO:0045595 regulation of cell differentiation BP
GO:0045597 positive regulation of cell differentiation BP
GO:0045785 positive regulation of cell adhesion BP
GO:0045893 positive regulation of DNA-templated transcription BP
GO:0045927 positive regulation of growth BP
GO:0045935 positive regulation of nucleobase-containing compound metabolic process BP
GO:0045944 positive regulation of transcription by RNA polymerase II BP
GO:0046164 alcohol catabolic process BP
GO:0046352 disaccharide catabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0048316 seed development BP
GO:0048364 root development BP
GO:0048507 meristem development BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048589 developmental growth BP
GO:0048608 reproductive structure development BP
GO:0048609 multicellular organismal reproductive process BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051094 positive regulation of developmental process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051254 positive regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0051716 cellular response to stimulus BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060560 developmental growth involved in morphogenesis BP
GO:0061412 positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation BP
GO:0061458 reproductive system development BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070577 lysine-acetylated histone binding MF
GO:0070603 SWI/SNF superfamily-type complex CC
GO:0070784 regulation of growth of unicellular organism as a thread of attached cells BP
GO:0070786 positive regulation of growth of unicellular organism as a thread of attached cells BP
GO:0071496 cellular response to external stimulus BP
GO:0071695 anatomical structure maturation BP
GO:0071704 organic substance metabolic process BP
GO:0071824 protein-DNA complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090033 positive regulation of filamentous growth BP
GO:0090304 nucleic acid metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0097437 maintenance of dormancy BP
GO:0098727 maintenance of cell number BP
GO:0099402 plant organ development BP
GO:0140030 modification-dependent protein binding MF
GO:0140033 acetylation-dependent protein binding MF
GO:1900187 regulation of cell adhesion involved in single-species biofilm formation BP
GO:1900189 positive regulation of cell adhesion involved in single-species biofilm formation BP
GO:1900190 regulation of single-species biofilm formation BP
GO:1900192 positive regulation of single-species biofilm formation BP
GO:1900428 regulation of filamentous growth of a population of unicellular organisms BP
GO:1900430 positive regulation of filamentous growth of a population of unicellular organisms BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901575 organic substance catabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901615 organic hydroxy compound metabolic process BP
GO:1901616 organic hydroxy compound catabolic process BP
GO:1901700 response to oxygen-containing compound BP
GO:1902494 catalytic complex CC
GO:1902680 positive regulation of RNA biosynthetic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903508 positive regulation of nucleic acid-templated transcription BP
GO:1904949 ATPase complex CC
GO:1905392 plant organ morphogenesis BP
GO:1990837 sequence-specific double-stranded DNA binding MF
GO:1990928 response to amino acid starvation BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000217 regulation of invasive growth in response to glucose limitation BP
GO:2000219 positive regulation of invasive growth in response to glucose limitation BP
GO:2000241 regulation of reproductive process BP
GO:2000243 positive regulation of reproductive process BP
GO:2001141 regulation of RNA biosynthetic process BP