PPGR - Gene Detail

Gene ID	PtXG22640 View in Genome Browser
Position	chr10:679965044-680035453 (+) 70409bp
Gene Type	gene
Gene Description (Protein Product)	-
Organism	Pinus tabuliformis
Also AS	AT4G30840

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	PtXG27120 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family PtXG29070 Belongs to the DEAD box helicase family PtXG45020 Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain
Regulatory gene	Pt0G00460 Transcription factor Pt0G00840 WRKY Transcription Factor Pt0G10980 Transcription factor

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005635	nuclear envelope	CC
GO:0005643	nuclear pore	CC
GO:0005737	cytoplasm	CC
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0012505	endomembrane system	CC
GO:0031080	nuclear pore outer ring	CC
GO:0031967	organelle envelope	CC
GO:0031975	envelope	CC
GO:0032991	protein-containing complex	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC

KEGG Term	Name	Description
map03013	RNA transport	RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.