Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PtXG23710
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Position
chr10:711621596-711624451 (+)
2855bp
Gene Type
gene
Gene Description (Protein Product)
"The light-harvesting complex (LHC) functions as a light receptor
Organism
Pinus tabuliformis
Also AS AT4G10340

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PtXG41760 Belongs to the adaptor complexes medium subunit family
PtXG41750 Photosystem II 22 kDa protein
PtXG41750
Regulatory gene
Pt0G01630 dof zinc finger protein
Pt0G07980 dof zinc finger protein
Pt1G66310 Dof domain, zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0006091 generation of precursor metabolites and energy BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009314 response to radiation BP
GO:0009416 response to light stimulus BP
GO:0009503 thylakoid light-harvesting complex CC
GO:0009507 chloroplast CC
GO:0009517 PSII associated light-harvesting complex II CC
GO:0009521 photosystem CC
GO:0009523 photosystem II CC
GO:0009526 plastid envelope CC
GO:0009532 plastid stroma CC
GO:0009534 chloroplast thylakoid CC
GO:0009535 chloroplast thylakoid membrane CC
GO:0009536 plastid CC
GO:0009570 chloroplast stroma CC
GO:0009579 thylakoid CC
GO:0009628 response to abiotic stimulus BP
GO:0009637 response to blue light BP
GO:0009639 response to red or far red light BP
GO:0009765 photosynthesis, light harvesting BP
GO:0009768 photosynthesis, light harvesting in photosystem I BP
GO:0009783 photosystem II antenna complex CC
GO:0009941 chloroplast envelope CC
GO:0009987 cellular process BP
GO:0010114 response to red light BP
GO:0010196 nonphotochemical quenching BP
GO:0010207 photosystem II assembly BP
GO:0010218 response to far red light BP
GO:0010287 plastoglobule CC
GO:0015979 photosynthesis BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016168 chlorophyll binding MF
GO:0019684 photosynthesis, light reaction BP
GO:0019904 protein domain specific binding MF
GO:0022607 cellular component assembly BP
GO:0030076 light-harvesting complex CC
GO:0031409 pigment binding MF
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0031976 plastid thylakoid CC
GO:0031984 organelle subcompartment CC
GO:0032991 protein-containing complex CC
GO:0034357 photosynthetic membrane CC
GO:0034622 protein-containing complex assembly BP
GO:0042651 thylakoid membrane CC
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044436 obsolete thylakoid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046906 tetrapyrrole binding MF
GO:0048037 obsolete cofactor binding MF
GO:0050896 response to stimulus BP
GO:0055035 plastid thylakoid membrane CC
GO:0065003 protein-containing complex assembly BP
GO:0071840 cellular component organization or biogenesis BP
GO:0097159 organic cyclic compound binding MF
GO:0098796 membrane protein complex CC
GO:0098807 chloroplast thylakoid membrane protein complex CC
GO:1901363 heterocyclic compound binding MF
GO:1990066 energy quenching BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00196 Photosynthesis - antenna proteins The chlorophyll-binding subunits of photosystems I and II are internal antenna light-harvesting proteins of oxygenic photosynthesis. The antenna proteins that exist in phycobilisomes in cyanobacteria and light-harvesting chlorophyll protein complexes in green plants act as peripheral antenna systems, enabling more efficient absorption of light energy.