PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	PtXG52340 View in Genome Browser
Position	chr10:1665169991-1665170350 (-) 359bp
Gene Type	gene
Gene Description (Protein Product)	structural constituent of ribosome
Organism	Pinus tabuliformis
Also AS	AT3G17730

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	PtXG52340 structural constituent of ribosome PtXG52640 Bromo adjacent homology domain
Regulatory gene	Pt0G01110 Myb-like DNA-binding domain Pt0G06240 Transcription factor Pt0G20740 (No apical meristem) protein
Target gene	Pt0G00110 Pt0G00170 homeobox-leucine zipper protein Pt0G00260

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000028	ribosomal small subunit assembly	BP
GO:0000075	cell cycle checkpoint signaling	BP
GO:0000082	G1/S transition of mitotic cell cycle	BP
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	BP
GO:0000278	mitotic cell cycle	BP
GO:0000281	mitotic cytokinesis	BP
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	BP
GO:0000910	cytokinesis	BP
GO:0000956	nuclear-transcribed mRNA catabolic process	BP
GO:0001775	cell activation	BP
GO:0001776	leukocyte homeostasis	BP
GO:0001890	placenta development	BP
GO:0002181	cytoplasmic translation	BP
GO:0002252	immune effector process	BP
GO:0002260	lymphocyte homeostasis	BP
GO:0002262	myeloid cell homeostasis	BP
GO:0002263	cell activation involved in immune response	BP
GO:0002285	lymphocyte activation involved in immune response	BP
GO:0002286	T cell activation involved in immune response	BP
GO:0002309	T cell proliferation involved in immune response	BP
GO:0002366	leukocyte activation involved in immune response	BP
GO:0002376	immune system process	BP
GO:0002520	immune system development	BP
GO:0002521	leukocyte differentiation	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003729	mRNA binding	MF
GO:0003735	structural constituent of ribosome	MF
GO:0005198	structural molecule activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005730	nucleolus	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005829	cytosol	CC
GO:0005840	ribosome	CC
GO:0005844	polysome	CC
GO:0005938	cell cortex	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006364	rRNA processing	BP
GO:0006396	RNA processing	BP
GO:0006401	RNA catabolic process	BP
GO:0006402	mRNA catabolic process	BP
GO:0006412	translation	BP
GO:0006413	translational initiation	BP
GO:0006518	peptide metabolic process	BP
GO:0006605	protein targeting	BP
GO:0006612	protein targeting to membrane	BP
GO:0006613	cotranslational protein targeting to membrane	BP
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0006915	apoptotic process	BP
GO:0006924	activation-induced cell death of T cells	BP
GO:0006955	immune response	BP
GO:0006996	organelle organization	BP
GO:0007049	cell cycle	BP
GO:0007093	mitotic cell cycle checkpoint signaling	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007275	multicellular organism development	BP
GO:0007276	gamete generation	BP
GO:0007281	germ cell development	BP
GO:0007292	female gamete generation	BP
GO:0007346	regulation of mitotic cell cycle	BP
GO:0007369	gastrulation	BP
GO:0007568	aging	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008219	cell death	BP
GO:0008283	cell population proliferation	BP
GO:0008340	determination of adult lifespan	BP
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009636	response to toxic substance	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009790	embryo development	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010243	response to organonitrogen compound	BP
GO:0010259	multicellular organism aging	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010629	negative regulation of gene expression	BP
GO:0010941	regulation of cell death	BP
GO:0010942	positive regulation of cell death	BP
GO:0012501	programmed cell death	BP
GO:0012505	endomembrane system	CC
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0015935	small ribosomal subunit	CC
GO:0016043	cellular component organization	BP
GO:0016070	RNA metabolic process	BP
GO:0016071	mRNA metabolic process	BP
GO:0016072	rRNA metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019439	aromatic compound catabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0019899	enzyme binding	MF
GO:0019900	kinase binding	MF
GO:0019901	protein kinase binding	MF
GO:0019953	sexual reproduction	BP
GO:0022402	cell cycle process	BP
GO:0022412	cellular process involved in reproduction in multicellular organism	BP
GO:0022414	reproductive process	BP
GO:0022605	mammalian oogenesis stage	BP
GO:0022607	cellular component assembly	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0022618	ribonucleoprotein complex assembly	BP
GO:0022626	cytosolic ribosome	CC
GO:0022627	cytosolic small ribosomal subunit	CC
GO:0023052	signaling	BP
GO:0030097	hemopoiesis	BP
GO:0030098	lymphocyte differentiation	BP
GO:0030099	myeloid cell differentiation	BP
GO:0030154	cell differentiation	BP
GO:0030217	T cell differentiation	BP
GO:0030218	erythrocyte differentiation	BP
GO:0030425	dendrite	CC
GO:0030490	maturation of SSU-rRNA	BP
GO:0030587	sorocarp development	BP
GO:0030684	preribosome	CC
GO:0030686	90S preribosome	CC
GO:0031929	TOR signaling	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032040	small-subunit processome	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032504	multicellular organism reproduction	BP
GO:0032868	response to insulin	BP
GO:0032943	mononuclear cell proliferation	BP
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033077	T cell differentiation in thymus	BP
GO:0033365	protein localization to organelle	BP
GO:0033500	carbohydrate homeostasis	BP
GO:0034101	erythrocyte homeostasis	BP
GO:0034470	ncRNA processing	BP
GO:0034613	protein localization	BP
GO:0034622	protein-containing complex assembly	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034655	nucleobase-containing compound catabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0035556	intracellular signal transduction	BP
GO:0035690	cellular response to xenobiotic stimulus	BP
GO:0035770	ribonucleoprotein granule	CC
GO:0036464	cytoplasmic ribonucleoprotein granule	CC
GO:0036477	somatodendritic compartment	CC
GO:0042098	T cell proliferation	BP
GO:0042110	T cell activation	BP
GO:0042221	response to chemical	BP
GO:0042254	ribosome biogenesis	BP
GO:0042255	ribosome assembly	BP
GO:0042274	ribosomal small subunit biogenesis	BP
GO:0042493	response to xenobiotic stimulus	BP
GO:0042592	homeostatic process	BP
GO:0042593	glucose homeostasis	BP
GO:0042886	amide transport	BP
GO:0042981	regulation of apoptotic process	BP
GO:0042995	cell projection	CC
GO:0043005	neuron projection	CC
GO:0043029	T cell homeostasis	BP
GO:0043043	peptide biosynthetic process	BP
GO:0043065	positive regulation of apoptotic process	BP
GO:0043066	negative regulation of apoptotic process	BP
GO:0043067	regulation of programmed cell death	BP
GO:0043068	positive regulation of programmed cell death	BP
GO:0043069	negative regulation of programmed cell death	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043434	response to peptide hormone	BP
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044087	regulation of cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044270	cellular nitrogen compound catabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044297	cell body	CC
GO:0044391	ribosomal subunit	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044445	obsolete cytosolic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044463	obsolete cell projection part	CC
GO:0044464	obsolete cell part	CC
GO:0044703	multi-organism reproductive process	BP
GO:0044770	cell cycle phase transition	BP
GO:0044772	mitotic cell cycle phase transition	BP
GO:0044843	cell cycle G1/S phase transition	BP
GO:0045047	protein targeting to ER	BP
GO:0045184	establishment of protein localization	BP
GO:0045321	leukocyte activation	BP
GO:0045471	response to ethanol	BP
GO:0045786	negative regulation of cell cycle	BP
GO:0045930	negative regulation of mitotic cell cycle	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046649	lymphocyte activation	BP
GO:0046651	lymphocyte proliferation	BP
GO:0046677	response to antibiotic	BP
GO:0046700	heterocycle catabolic process	BP
GO:0046907	intracellular transport	BP
GO:0048468	cell development	BP
GO:0048471	perinuclear region of cytoplasm	CC
GO:0048477	oogenesis	BP
GO:0048513	animal organ development	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048534	hematopoietic or lymphoid organ development	BP
GO:0048598	embryonic morphogenesis	BP
GO:0048608	reproductive structure development	BP
GO:0048609	multicellular organismal reproductive process	BP
GO:0048731	system development	BP
GO:0048821	erythrocyte development	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0048872	homeostasis of number of cells	BP
GO:0048878	chemical homeostasis	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051129	negative regulation of cellular component organization	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051301	cell division	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051703	biological process involved in intraspecies interaction between organisms	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051716	cellular response to stimulus	BP
GO:0051726	regulation of cell cycle	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060548	negative regulation of cell death	BP
GO:0061458	reproductive system development	BP
GO:0061515	myeloid cell development	BP
GO:0061640	cytoskeleton-dependent cytokinesis	BP
GO:0065003	protein-containing complex assembly	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070227	lymphocyte apoptotic process	BP
GO:0070231	T cell apoptotic process	BP
GO:0070661	leukocyte proliferation	BP
GO:0070727	cellular macromolecule localization	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0070925	organelle assembly	BP
GO:0070938	contractile ring	CC
GO:0070972	protein localization to endoplasmic reticulum	BP
GO:0071236	cellular response to antibiotic	BP
GO:0071310	cellular response to organic substance	BP
GO:0071361	cellular response to ethanol	BP
GO:0071702	organic substance transport	BP
GO:0071704	organic substance metabolic process	BP
GO:0071705	nitrogen compound transport	BP
GO:0071826	ribonucleoprotein complex subunit organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071887	leukocyte apoptotic process	BP
GO:0071944	cell periphery	CC
GO:0072594	establishment of protein localization to organelle	BP
GO:0072599	establishment of protein localization to endoplasmic reticulum	BP
GO:0072657	protein localization to membrane	BP
GO:0090150	establishment of protein localization to membrane	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090702	socially cooperative development	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097237	cellular response to toxic substance	BP
GO:0097305	response to alcohol	BP
GO:0097306	cellular response to alcohol	BP
GO:0097447	dendritic tree	CC
GO:0097458	obsolete neuron part	CC
GO:0099120	socially cooperative development	BP
GO:0099568	cytoplasmic region	CC
GO:0120025	plasma membrane bounded cell projection	CC
GO:0120038	obsolete plasma membrane bounded cell projection part	CC
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901361	organic cyclic compound catabolic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901652	response to peptide	BP
GO:1901698	response to nitrogen compound	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1901701	cellular response to oxygen-containing compound	BP
GO:1901888	regulation of cell junction assembly	BP
GO:1901889	negative regulation of cell junction assembly	BP
GO:1903047	mitotic cell cycle process	BP
GO:1903347	negative regulation of bicellular tight junction assembly	BP
GO:1990904	ribonucleoprotein complex	CC
GO:2000810	regulation of bicellular tight junction assembly	BP

KEGG Term	Name	Description
map03010	Ribosome	-