PPGR - Gene Detail

Basic Information

Gene ID	PITA_50224.g View in Genome Browser
Position	scaffold85300:57355-87837 (-) 30482bp
Gene Type	gene
Gene Description (Protein Product)	photosystem I assembly
Organism	Pinus taeda
Also AS	AT3G08010

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

PITA_50943.g Belongs to the bacterial ribosomal protein bL31 family

PITA_50839.g 50S ribosomal protein L27 chloroplastic

PITA_51420.g Lil3 protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006091	generation of precursor metabolites and energy	BP
GO:0006412	translation	BP
GO:0006518	peptide metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009314	response to radiation	BP
GO:0009416	response to light stimulus	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009628	response to abiotic stimulus	BP
GO:0009639	response to red or far red light	BP
GO:0009640	photomorphogenesis	BP
GO:0009657	plastid organization	BP
GO:0009658	chloroplast organization	BP
GO:0009704	de-etiolation	BP
GO:0009791	post-embryonic development	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0015979	photosynthesis	BP
GO:0016043	cellular component organization	BP
GO:0019538	protein metabolic process	BP
GO:0019684	photosynthesis, light reaction	BP
GO:0022607	cellular component assembly	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0034622	protein-containing complex assembly	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0043043	peptide biosynthetic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0048564	photosystem I assembly	BP
GO:0048856	anatomical structure development	BP
GO:0050896	response to stimulus	BP
GO:0065003	protein-containing complex assembly	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0097159	organic cyclic compound binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP