PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-H0E87_026226 View in Genome Browser
Position	CM027570.1:38728509-38730554 (+) 2045bp
Gene Type	gene
Gene Description (Protein Product)	Required for the assembly and or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits
Organism	Populus deltoides
Also AS	Podel.01G175500AT1G72370Potri.001G164000.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	gene-H0E87_026628 30S ribosomal protein S10 gene-H0E87_027468 60S ribosomal Protein gene-H0E87_026680 60S ribosomal protein
Regulatory gene	gene-H0E87_000097 Zinc finger protein gene-H0E87_000116 Myb-related protein gene-H0E87_000257 Zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC

KEGG Term	Name	Description
map03010	Ribosome	-