Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Ppr_2457.14494.g
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Position
scaffold2457:2341907-2348027 (+)
6120bp
Gene Type
gene
Gene Description (Protein Product)
Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor
Organism
Populus pruinosa
Also AS Potri.003G180800AT1G15880Potri.003G180800.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ppr_4570.22257.g Belongs to the syntaxin family
Ppr_3568.18738.g Belongs to the syntaxin family
Ppr_47942.22642.g Belongs to the synaptobrevin family
Regulatory gene
Ppr_1043.325.g Belongs to the GRAS family
Ppr_1043.374.g zinc finger
Ppr_10661.565.g Truncated transcription factor CAULIFLOWER

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000139 Golgi membrane CC
GO:0003674 molecular_function MF
GO:0005484 SNAP receptor activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005794 Golgi apparatus CC
GO:0005795 Golgi stack CC
GO:0005797 Golgi medial cisterna CC
GO:0005801 cis-Golgi network CC
GO:0006810 transport BP
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport BP
GO:0006906 vesicle fusion BP
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0009987 cellular process BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016050 vesicle organization BP
GO:0016192 vesicle-mediated transport BP
GO:0031090 organelle membrane CC
GO:0031201 SNARE complex CC
GO:0031984 organelle subcompartment CC
GO:0031985 Golgi cisterna CC
GO:0032879 regulation of localization BP
GO:0032991 protein-containing complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046907 intracellular transport BP
GO:0048193 Golgi vesicle transport BP
GO:0048209 regulation of vesicle targeting, to, from or within Golgi BP
GO:0048284 organelle fusion BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051049 regulation of transport BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0060341 regulation of cellular localization BP
GO:0060627 regulation of vesicle-mediated transport BP
GO:0061024 membrane organization BP
GO:0061025 membrane fusion BP
GO:0065007 biological regulation BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090174 organelle membrane fusion BP
GO:0098588 bounding membrane of organelle CC
GO:0098791 Golgi apparatus subcompartment CC
GO:0098796 membrane protein complex CC
KEGG Term Name Description
map04130 SNARE interactions in vesicular transport -