PPGR - Gene Detail

Basic Information

Gene ID	Potra2n4c10466 View in Genome Browser
Position	chr4:20457154-20462049 (-) 4895bp
Gene Type	gene
Gene Description (Protein Product)	"Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall
Organism	Populus tremula
Also AS	Potri.004G234100AT4G19420Potri.004G234100.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Potra2n7c15593 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

Potra2n4c8599 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

Potra2n4c8599 Ubiquitin family

Regulatory gene

Potra2n10c20596 Dof zinc finger protein

Potra2n10c20949 Cyclic dof factor

Potra2n11c23230 Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005618	cell wall	CC
GO:0005623	obsolete cell	CC
GO:0008150	biological_process	BP
GO:0009505	plant-type cell wall	CC
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0016787	hydrolase activity	MF
GO:0016788	hydrolase activity, acting on ester bonds	MF
GO:0030312	external encapsulating structure	CC
GO:0044464	obsolete cell part	CC
GO:0045229	external encapsulating structure organization	BP
GO:0052689	carboxylic ester hydrolase activity	MF
GO:0052793	pectin acetylesterase activity	MF
GO:0071554	cell wall organization or biogenesis	BP
GO:0071555	cell wall organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC