Basic Information
Gene ID
Potra2n9c18810
Position
chr9:1254310-1256046 (+)
1736bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor U2af small subunit
Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Organism
Also AS Potri.004G188900AT1G27650Potri.004G188900.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potra2n9c19678 RNA-binding protein
Potra2n9c19771 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Potra2n9c18810 Splicing factor U2af small subunit

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.