PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	Potra2n9c19756 View in Genome Browser
Position	chr9:8325926-8330260 (-) 4334bp
Gene Type	gene
Gene Description (Protein Product)	Phosphomethylpyrimidine synthase
Organism	Populus tremula
Also AS	Potri.009G043200AT2G29630Potri.009G043200.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Potra2n9c19756 Phosphomethylpyrimidine synthase

Potra2n9c19775 -

Potra2n9c19998 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006766	vitamin metabolic process	BP
GO:0006767	water-soluble vitamin metabolic process	BP
GO:0006772	thiamine metabolic process	BP
GO:0006790	sulfur compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007584	response to nutrient	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009110	vitamin biosynthetic process	BP
GO:0009228	thiamine biosynthetic process	BP
GO:0009507	chloroplast	CC
GO:0009532	plastid stroma	CC
GO:0009536	plastid	CC
GO:0009570	chloroplast stroma	CC
GO:0009605	response to external stimulus	BP
GO:0009987	cellular process	BP
GO:0009991	response to extracellular stimulus	BP
GO:0010033	response to organic substance	BP
GO:0010243	response to organonitrogen compound	BP
GO:0010266	response to vitamin B1	BP
GO:0014070	response to organic cyclic compound	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0018130	heterocycle biosynthetic process	BP
GO:0019144	ADP-sugar diphosphatase activity	MF
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019904	protein domain specific binding	MF
GO:0031667	response to nutrient levels	BP
GO:0033273	response to vitamin	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0042221	response to chemical	BP
GO:0042364	water-soluble vitamin biosynthetic process	BP
GO:0042493	response to xenobiotic stimulus	BP
GO:0042723	thiamine-containing compound metabolic process	BP
GO:0042724	thiamine-containing compound biosynthetic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044272	sulfur compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0048037	obsolete cofactor binding	MF
GO:0050896	response to stimulus	BP
GO:0051536	iron-sulfur cluster binding	MF
GO:0051540	metal cluster binding	MF
GO:0071704	organic substance metabolic process	BP
GO:0072527	pyrimidine-containing compound metabolic process	BP
GO:0072528	pyrimidine-containing compound biosynthetic process	BP
GO:0080041	ADP-ribose pyrophosphohydrolase activity	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901698	response to nitrogen compound	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00730	Thiamine metabolism	-