Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potra2n9c19780
View in Genome Browser
Position
chr9:8527142-8541541 (+)
14399bp
Gene Type
gene
Gene Description (Protein Product)
"Tubulin is the major constituent of microtubules. It binds two moles of GTP
Ring finger
Organism
Populus tremula
Also AS Potri.009G040500Potri.009G040200AT5G62700Potri.009G040500.v4.1Potri.009G040200.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potra2n9c19909 Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family
Potra2n9c19904 Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family
Potra2n9c19951 The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000228 nuclear chromosome CC
GO:0000793 condensed chromosome CC
GO:0000794 condensed nuclear chromosome CC
GO:0001701 in utero embryonic development BP
GO:0001756 somitogenesis BP
GO:0001932 regulation of protein phosphorylation BP
GO:0002020 protease binding MF
GO:0002791 regulation of peptide secretion BP
GO:0002793 positive regulation of peptide secretion BP
GO:0003002 regionalization BP
GO:0003007 heart morphogenesis BP
GO:0003008 system process BP
GO:0003012 muscle system process BP
GO:0003013 circulatory system process BP
GO:0003015 heart process BP
GO:0003300 cardiac muscle hypertrophy BP
GO:0003674 molecular_function MF
GO:0003779 actin binding MF
GO:0003824 catalytic activity MF
GO:0004672 protein kinase activity MF
GO:0004674 protein serine/threonine kinase activity MF
GO:0004713 protein tyrosine kinase activity MF
GO:0005198 structural molecule activity MF
GO:0005200 structural constituent of cytoskeleton MF
GO:0005488 binding MF
GO:0005509 calcium ion binding MF
GO:0005515 protein binding MF
GO:0005516 calmodulin binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005694 chromosome CC
GO:0005737 cytoplasm CC
GO:0005856 cytoskeleton CC
GO:0005859 muscle myosin complex CC
GO:0005865 striated muscle thin filament CC
GO:0006464 protein modification process BP
GO:0006468 protein phosphorylation BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006936 muscle contraction BP
GO:0006941 striated muscle contraction BP
GO:0006996 organelle organization BP
GO:0007010 cytoskeleton organization BP
GO:0007015 actin filament organization BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007275 multicellular organism development BP
GO:0007389 pattern specification process BP
GO:0007399 nervous system development BP
GO:0007417 central nervous system development BP
GO:0007420 brain development BP
GO:0007507 heart development BP
GO:0007512 adult heart development BP
GO:0007517 muscle organ development BP
GO:0008015 blood circulation BP
GO:0008092 cytoskeletal protein binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008307 structural constituent of muscle MF
GO:0009581 detection of external stimulus BP
GO:0009582 detection of abiotic stimulus BP
GO:0009605 response to external stimulus BP
GO:0009612 response to mechanical stimulus BP
GO:0009628 response to abiotic stimulus BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009790 embryo development BP
GO:0009792 embryo development ending in birth or egg hatching BP
GO:0009887 animal organ morphogenesis BP
GO:0009888 tissue development BP
GO:0009893 positive regulation of metabolic process BP
GO:0009952 anterior/posterior pattern specification BP
GO:0009987 cellular process BP
GO:0010035 response to inorganic substance BP
GO:0010038 response to metal ion BP
GO:0010468 regulation of gene expression BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010628 positive regulation of gene expression BP
GO:0010737 protein kinase A signaling BP
GO:0010927 cellular component assembly involved in morphogenesis BP
GO:0014706 striated muscle tissue development BP
GO:0014866 skeletal myofibril assembly BP
GO:0014896 muscle hypertrophy BP
GO:0014897 striated muscle hypertrophy BP
GO:0015629 actin cytoskeleton CC
GO:0016043 cellular component organization BP
GO:0016301 kinase activity MF
GO:0016310 phosphorylation BP
GO:0016459 myosin complex CC
GO:0016460 myosin II complex CC
GO:0016740 transferase activity MF
GO:0016772 transferase activity, transferring phosphorus-containing groups MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0018108 peptidyl-tyrosine phosphorylation BP
GO:0018193 peptidyl-amino acid modification BP
GO:0018212 peptidyl-tyrosine modification BP
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019899 enzyme binding MF
GO:0019900 kinase binding MF
GO:0019901 protein kinase binding MF
GO:0021591 ventricular system development BP
GO:0022607 cellular component assembly BP
GO:0023052 signaling BP
GO:0030016 myofibril CC
GO:0030017 sarcomere CC
GO:0030018 Z disc CC
GO:0030029 actin filament-based process BP
GO:0030036 actin cytoskeleton organization BP
GO:0030154 cell differentiation BP
GO:0030239 myofibril assembly BP
GO:0030240 skeletal muscle thin filament assembly BP
GO:0030241 skeletal muscle myosin thick filament assembly BP
GO:0030506 ankyrin binding MF
GO:0031032 actomyosin structure organization BP
GO:0031033 myosin filament organization BP
GO:0031034 myosin filament assembly BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031399 regulation of protein modification process BP
GO:0031430 M band CC
GO:0031433 telethonin binding MF
GO:0031672 A band CC
GO:0031674 I band CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032268 regulation of protein metabolic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032879 regulation of localization BP
GO:0032880 regulation of protein localization BP
GO:0032989 cellular component morphogenesis BP
GO:0032991 protein-containing complex CC
GO:0033058 directional locomotion BP
GO:0034622 protein-containing complex assembly BP
GO:0035051 cardiocyte differentiation BP
GO:0035265 organ growth BP
GO:0035282 segmentation BP
GO:0035556 intracellular signal transduction BP
GO:0035994 response to muscle stretch BP
GO:0035995 detection of muscle stretch BP
GO:0036211 protein modification process BP
GO:0036379 myofilament CC
GO:0040007 growth BP
GO:0040011 locomotion BP
GO:0042221 response to chemical BP
GO:0042325 regulation of phosphorylation BP
GO:0042692 muscle cell differentiation BP
GO:0042802 identical protein binding MF
GO:0042805 actinin binding MF
GO:0043009 chordate embryonic development BP
GO:0043056 forward locomotion BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043292 contractile fiber CC
GO:0043412 macromolecule modification BP
GO:0043549 regulation of kinase activity BP
GO:0043621 protein self-association MF
GO:0043933 protein-containing complex organization BP
GO:0044057 regulation of system process BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044449 obsolete contractile fiber part CC
GO:0044464 obsolete cell part CC
GO:0044877 protein-containing complex binding MF
GO:0045214 sarcomere organization BP
GO:0045859 regulation of protein kinase activity BP
GO:0046872 metal ion binding MF
GO:0048468 cell development BP
GO:0048513 animal organ development BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048589 developmental growth BP
GO:0048644 muscle organ morphogenesis BP
GO:0048646 anatomical structure formation involved in morphogenesis BP
GO:0048729 tissue morphogenesis BP
GO:0048731 system development BP
GO:0048738 cardiac muscle tissue development BP
GO:0048739 cardiac muscle cell development BP
GO:0048747 muscle cell development BP
GO:0048769 sarcomerogenesis BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050708 regulation of protein secretion BP
GO:0050714 positive regulation of protein secretion BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0050982 detection of mechanical stimulus BP
GO:0051015 actin filament binding MF
GO:0051046 regulation of secretion BP
GO:0051047 positive regulation of secretion BP
GO:0051049 regulation of transport BP
GO:0051050 positive regulation of transport BP
GO:0051146 striated muscle cell differentiation BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051222 positive regulation of protein transport BP
GO:0051223 regulation of protein transport BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051338 regulation of transferase activity BP
GO:0051371 muscle alpha-actinin binding MF
GO:0051393 alpha-actinin binding MF
GO:0051592 response to calcium ion BP
GO:0051606 detection of stimulus BP
GO:0051716 cellular response to stimulus BP
GO:0055001 muscle cell development BP
GO:0055002 striated muscle cell development BP
GO:0055003 cardiac myofibril assembly BP
GO:0055006 cardiac cell development BP
GO:0055007 cardiac muscle cell differentiation BP
GO:0055008 cardiac muscle tissue morphogenesis BP
GO:0055013 cardiac muscle cell development BP
GO:0060047 heart contraction BP
GO:0060048 cardiac muscle contraction BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060322 head development BP
GO:0060415 muscle tissue morphogenesis BP
GO:0060419 heart growth BP
GO:0060429 epithelium development BP
GO:0060537 muscle tissue development BP
GO:0061053 somite development BP
GO:0061061 muscle structure development BP
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0070013 intracellular organelle lumen CC
GO:0070201 regulation of establishment of protein localization BP
GO:0070925 organelle assembly BP
GO:0071688 striated muscle myosin thick filament assembly BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072359 circulatory system development BP
GO:0080090 regulation of primary metabolic process BP
GO:0090087 regulation of peptide transport BP
GO:0090257 regulation of muscle system process BP
GO:0097435 supramolecular fiber organization BP
GO:0097493 structural molecule activity conferring elasticity MF
GO:0099080 supramolecular complex CC
GO:0099081 supramolecular polymer CC
GO:0099512 supramolecular fiber CC
GO:0140096 catalytic activity, acting on a protein MF
GO:1901077 regulation of relaxation of muscle BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901897 regulation of relaxation of cardiac muscle BP
GO:1903530 regulation of secretion by cell BP
GO:1903532 positive regulation of secretion by cell BP
GO:1904951 positive regulation of establishment of protein localization BP
KEGG Term Name Description
map04145 Phagosome Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.