Basic Information
Gene ID
Potrx000020g00020
Position
Potrx000020:7362-11594 (-)
4232bp
Gene Type
gene
Gene Description (Protein Product)
Alba
Organism
Also AS Potri.005G194600AT1G76010Potri.005G194600.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrx001276g00010 NHP2-like protein 1
Potrx006418g00010 NHP2-like protein 1
Potrx004565g00010 Glutathione synthetase
Regulatory gene
Potrx000259g00020 B3 domain-containing transcription factor
Potrx000278g00040 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Potrx000718g00010 B3 DNA binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03008 Ribosome biogenesis in eukaryotes Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.