Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Potrx000278g00040
View in Genome Browser
Position
Potrx000278:26755-32383 (-)
5628bp
Gene Type
gene
Gene Description (Protein Product)
"SANT SWI3
Organism
Populus tremula x Populus tremuloides
Also AS Potri.006G126300AT2G37025Potri.006G126300.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrx005889g00010 CBL-interacting serine threonine-protein kinase
Potrx005221g00030 Extra-large guanine nucleotide-binding protein
Potrx045452g00010 Extra-large guanine nucleotide-binding protein
Regulatory gene
Potrx000106g00010 MADS-box protein
Potrx000259g00020 B3 domain-containing transcription factor
Potrx000589g00010 Agamous-like MADS-box protein
Target gene
Potrx000003g00020 Belongs to the peptidase C19 family
Potrx000019g00010 Lecithin retinol acyltransferase
Potrx000020g00020 Alba

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000228 nuclear chromosome CC
GO:0000723 telomere maintenance BP
GO:0000781 chromosome, telomeric region CC
GO:0000782 telomere cap complex CC
GO:0000783 nuclear telomere cap complex CC
GO:0000784 chromosome, telomeric region CC
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003691 double-stranded telomeric DNA binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005694 chromosome CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0031627 telomeric loop formation BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032200 telomere organization BP
GO:0032991 protein-containing complex CC
GO:0032993 protein-DNA complex CC
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0042162 telomeric DNA binding MF
GO:0042592 homeostatic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043565 sequence-specific DNA binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0051276 chromosome organization BP
GO:0060249 anatomical structure homeostasis BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070013 intracellular organelle lumen CC
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0098687 chromosomal region CC
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF