Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Potrx001836g00010
View in Genome Browser
Position
Potrx001836:2272-3978 (-)
1706bp
Gene Type
gene
Gene Description (Protein Product)
zinc finger CCCH domain-containing protein
Organism
Populus tremula x Populus tremuloides
Also AS Potri.017G013400AT1G03790Potri.017G013400.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrx029422g00010 zinc-finger of the FCS-type, C2-C2
Potrx054088g00010 Lipolytic acyl hydrolase (LAH)
Potrx059519g00020 General transcription factor IIH subunit
Target gene
Potrx000003g00030 -
Potrx000291g00020 Belongs to the chalcone stilbene synthases family
Potrx000451g00010 Hydroxyproline-rich glycoprotein family protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000932 P-body CC
GO:0003674 molecular_function MF
GO:0003700 DNA-binding transcription factor activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0006355 regulation of DNA-templated transcription BP
GO:0008150 biological_process BP
GO:0009889 regulation of biosynthetic process BP
GO:0010029 regulation of seed germination BP
GO:0010187 negative regulation of seed germination BP
GO:0010468 regulation of gene expression BP
GO:0010494 cytoplasmic stress granule CC
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0032991 protein-containing complex CC
GO:0035770 ribonucleoprotein granule CC
GO:0036464 cytoplasmic ribonucleoprotein granule CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0048519 negative regulation of biological process BP
GO:0048580 regulation of post-embryonic development BP
GO:0048581 negative regulation of post-embryonic development BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0051093 negative regulation of developmental process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051241 negative regulation of multicellular organismal process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0080090 regulation of primary metabolic process BP
GO:0140110 transcription regulator activity MF
GO:1900140 regulation of seedling development BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1990904 ribonucleoprotein complex CC
GO:2000026 regulation of multicellular organismal development BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP