Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Potrx009590g00010
View in Genome Browser
Position
Potrx009590:6054-12424 (+)
6370bp
Gene Type
gene
Gene Description (Protein Product)
V-type proton ATPase subunit
Organism
Populus tremula x Populus tremuloides
Also AS Potri.013G078700AT3G42050

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrx047130g00010 V-type proton ATPase catalytic subunit
Potrx066249g00010 V-type proton ATPase catalytic subunit
Potrx046216g00010 Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system
Regulatory gene
Potrx000106g00010 MADS-box protein
Potrx000278g00040 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Potrx000589g00010 Agamous-like MADS-box protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain CC
GO:0000325 plant-type vacuole CC
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005215 transporter activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005774 vacuolar membrane CC
GO:0005794 Golgi apparatus CC
GO:0005886 plasma membrane CC
GO:0006810 transport BP
GO:0006811 monoatomic ion transport BP
GO:0006812 monoatomic cation transport BP
GO:0006873 intracellular monoatomic ion homeostasis BP
GO:0006885 regulation of pH BP
GO:0007035 vacuolar acidification BP
GO:0008150 biological_process BP
GO:0008324 monoatomic cation transmembrane transporter activity MF
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009987 cellular process BP
GO:0012505 endomembrane system CC
GO:0015075 monoatomic ion transmembrane transporter activity MF
GO:0015077 inorganic cation transmembrane transporter activity MF
GO:0015078 proton transmembrane transporter activity MF
GO:0015318 inorganic molecular entity transmembrane transporter activity MF
GO:0015399 primary active transmembrane transporter activity MF
GO:0015405 ATPase-coupled transmembrane transporter activity MF
GO:0015672 inorganic cation transmembrane transport BP
GO:0016020 membrane CC
GO:0016462 pyrophosphatase activity MF
GO:0016469 proton-transporting two-sector ATPase complex CC
GO:0016471 vacuolar proton-transporting V-type ATPase complex CC
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0016887 ATP hydrolysis activity MF
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0019725 cellular homeostasis BP
GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity MF
GO:0022804 active transmembrane transporter activity MF
GO:0022853 active monoatomic ion transmembrane transporter activity MF
GO:0022857 transmembrane transporter activity MF
GO:0022890 inorganic cation transmembrane transporter activity MF
GO:0030003 intracellular monoatomic cation homeostasis BP
GO:0030004 obsolete cellular monovalent inorganic cation homeostasis BP
GO:0030641 regulation of cellular pH BP
GO:0031090 organelle membrane CC
GO:0032991 protein-containing complex CC
GO:0033176 proton-transporting V-type ATPase complex CC
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain CC
GO:0033180 proton-transporting V-type ATPase, V1 domain CC
GO:0034220 monoatomic ion transmembrane transport BP
GO:0036442 P-type proton-exporting transporter activity MF
GO:0042592 homeostatic process BP
GO:0042623 ATP hydrolysis activity MF
GO:0042625 ATPase-coupled ion transmembrane transporter activity MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043492 ATPase-coupled transmembrane transporter activity MF
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044437 obsolete vacuolar part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism MF
GO:0045851 pH reduction BP
GO:0046961 proton-transporting ATPase activity, rotational mechanism MF
GO:0048878 chemical homeostasis BP
GO:0050801 monoatomic ion homeostasis BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051452 intracellular pH reduction BP
GO:0051453 regulation of intracellular pH BP
GO:0055067 obsolete monovalent inorganic cation homeostasis BP
GO:0055080 monoatomic cation homeostasis BP
GO:0055082 intracellular chemical homeostasis BP
GO:0055085 transmembrane transport BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0071944 cell periphery CC
GO:0090662 transmembrane transport BP
GO:0098588 bounding membrane of organelle CC
GO:0098655 monoatomic cation transmembrane transport BP
GO:0098660 inorganic ion transmembrane transport BP
GO:0098662 inorganic cation transmembrane transport BP
GO:0098771 inorganic ion homeostasis BP
GO:0098796 membrane protein complex CC
GO:0098805 membrane CC
GO:0099131 monoatomic ion transmembrane transport BP
GO:0099132 monoatomic cation transmembrane transport BP
GO:1902600 proton transmembrane transport BP
KEGG Term Name Description
map04145 Phagosome Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.
map01100 Metabolic pathways -
map00190 Oxidative phosphorylation -