Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Potrx054561g00010
View in Genome Browser
Position
Potrx054561:224-5667 (+)
5443bp
Gene Type
gene
Gene Description (Protein Product)
ADP-ribosylation factor GTPase-activating protein
Organism
Populus tremula x Populus tremuloides
Also AS Potri.011G098500AT4G21160AT4G05330Potri.011G098500.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrx058346g00010 Clathrin is the major protein of the polyhedral coat of coated pits and vesicles
Potrx063877g00040 Clathrin is the major protein of the polyhedral coat of coated pits and vesicles
Potrx061031g00010 Belongs to the small GTPase superfamily. Arf family
Regulatory gene
Potrx000002g00030 Belongs to the GRAS family
Potrx000106g00010 MADS-box protein
Potrx000259g00020 B3 domain-containing transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0005096 GTPase activator activity MF
GO:0005488 binding MF
GO:0005543 phospholipid binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005794 Golgi apparatus CC
GO:0005886 plasma membrane CC
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0007275 multicellular organism development BP
GO:0008047 enzyme activator activity MF
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008289 lipid binding MF
GO:0009555 pollen development BP
GO:0012505 endomembrane system CC
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0016020 membrane CC
GO:0030234 enzyme regulator activity MF
GO:0030695 GTPase regulator activity MF
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0033036 macromolecule localization BP
GO:0034613 protein localization BP
GO:0042886 amide transport BP
GO:0043085 positive regulation of catalytic activity BP
GO:0043087 regulation of GTPase activity BP
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043547 positive regulation of GTPase activity BP
GO:0044093 positive regulation of molecular function BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0045184 establishment of protein localization BP
GO:0046907 intracellular transport BP
GO:0048229 gametophyte development BP
GO:0048856 anatomical structure development BP
GO:0050790 regulation of catalytic activity BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051336 regulation of hydrolase activity BP
GO:0051345 positive regulation of hydrolase activity BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0060589 nucleoside-triphosphatase regulator activity MF
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0070727 cellular macromolecule localization BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071944 cell periphery CC
GO:0098772 molecular function regulator activity MF
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.