PPGR - Gene Detail

Basic Information

Gene ID	Potrx065366g00010 View in Genome Browser
Position	Potrx065366:2090-4999 (-) 2909bp
Gene Type	gene
Gene Description (Protein Product)	SWI SNF complex component SNF12 homolog
Organism	Populus tremula x Populus tremuloides
Also AS	Potri.012G096700AT5G14170Potri.012G096700.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Potrx066254g00020 FACT complex subunit

Potrx065366g00010 SWI SNF complex component SNF12 homolog

Potrx065955g00020 DNA gyrase subunit A

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006281	DNA repair	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006974	cellular response to DNA damage stimulus	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009314	response to radiation	BP
GO:0009411	response to UV	BP
GO:0009416	response to light stimulus	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009909	regulation of flower development	BP
GO:0009987	cellular process	BP
GO:0010224	response to UV-B	BP
GO:0010468	regulation of gene expression	BP
GO:0019222	regulation of metabolic process	BP
GO:0022622	root system development	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0033554	cellular response to stress	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0048364	root development	BP
GO:0048580	regulation of post-embryonic development	BP
GO:0048731	system development	BP
GO:0048831	regulation of shoot system development	BP
GO:0048856	anatomical structure development	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050896	response to stimulus	BP
GO:0051239	regulation of multicellular organismal process	BP
GO:0051716	cellular response to stimulus	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0071704	organic substance metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0099402	plant organ development	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:2000024	regulation of leaf development	BP
GO:2000026	regulation of multicellular organismal development	BP
GO:2000241	regulation of reproductive process	BP