Basic Information
Gene ID
Potrs011929g16801
Position
Potrs011929:1992-7651 (+)
5659bp
Gene Type
gene
Gene Description (Protein Product)
U2 snRNP auxiliary factor large subunit
Organism
Also AS Potri.011G050400AT1G60900Potri.011G050400.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs042320g26569 cell division cycle 5-like
Potrs018147g20455 Splicing factor U2af small subunit
Potrs041998g26365 Splicing factor U2af small subunit
Regulatory gene
Potrs000124g00190 B3 DNA binding domain
Potrs000182g00239 WRKY transcription factor
Potrs000238g00518 WRKY transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.