Basic Information
Gene ID
Potrs042927g27025
Position
Potrs042927:4371-30639 (+)
26268bp
Gene Type
gene
Gene Description (Protein Product)
ABC transporter B family member
Organism
Also AS Potri.002G187500Potri.014G113000AT1G02520AT3G62150Potri.002G187500.v4.1Potri.014G113000.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs042927g27025 ABC transporter B family member
Potrs146892g29430 Belongs to the protein kinase superfamily
Potrs144681g27150 wall-associated receptor kinase-like
Regulatory gene
Potrs000274g00383 Squamosa promoter-binding-like protein
Potrs000335g00445 Homeobox-leucine zipper protein GLABRA
Potrs000370g00459 Homeobox-leucine zipper protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map02010 ABC transporters The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).