PPGR - Gene Detail

Basic Information

Gene ID	PSME_00068.g
Position	jcf7190000121333:30883-31440 (+) 557bp
Gene Type	gene
Gene Description (Protein Product)	Saccharomyces cerevisiae YHR100C
Organism	Pseudotsuga menziesii
Also AS	AT3G58830

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

PSME_04870.g Component of the nascent polypeptide-associated complex (NAC), a dynamic component of the ribosomal exit tunnel, protecting the emerging polypeptides from interaction with other cytoplasmic proteins to ensure appropriate nascent protein targeting. The NAC complex also promotes mitochondrial protein import by enhancing productive ribosome interactions with the outer mitochondrial membrane and blocks the inappropriate interaction of ribosomes translating non-secretory nascent polypeptides with translocation sites in the membrane of the endoplasmic reticulum. EGD2 may also be involved in transcription regulation (By similarity)

PSME_06404.g Mitochondrial GTPase involved in mitochondrial trafficking

PSME_05855.g Belongs to the DEAD box helicase family

Regulatory gene

PSME_01732.g Ocs element-binding factor

PSME_02435.g Ocs element-binding factor

PSME_05347.g Basic region leucine zipper

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005759	mitochondrial matrix	CC
GO:0005975	carbohydrate metabolic process	BP
GO:0006629	lipid metabolic process	BP
GO:0006644	phospholipid metabolic process	BP
GO:0006650	glycerophospholipid metabolic process	BP
GO:0006655	phosphatidylglycerol biosynthetic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007005	mitochondrion organization	BP
GO:0007006	mitochondrial membrane organization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008610	lipid biosynthetic process	BP
GO:0008654	phospholipid biosynthetic process	BP
GO:0008962	phosphatidylglycerophosphatase activity	MF
GO:0009058	biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0016311	dephosphorylation	BP
GO:0016787	hydrolase activity	MF
GO:0016788	hydrolase activity, acting on ester bonds	MF
GO:0016791	phosphatase activity	MF
GO:0019637	organophosphate metabolic process	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0032048	cardiolipin metabolic process	BP
GO:0032049	cardiolipin biosynthetic process	BP
GO:0042578	phosphoric ester hydrolase activity	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044262	cellular carbohydrate metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044429	obsolete mitochondrial part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0045017	glycerolipid biosynthetic process	BP
GO:0046471	phosphatidylglycerol metabolic process	BP
GO:0046474	glycerophospholipid biosynthetic process	BP
GO:0046486	glycerolipid metabolic process	BP
GO:0046838	phosphorylated carbohydrate dephosphorylation	BP
GO:0061024	membrane organization	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090407	organophosphate biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00564	Glycerophospholipid metabolism	-