Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_29020.g
Position
jcf7190000195137:14637-16661 (+)
2024bp
Gene Type
gene
Gene Description (Protein Product)
to Saccharomyces cerevisiae PEP7 (YDR323C)
Organism
Pseudotsuga menziesii
Also AS

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_37187.g Belongs to the STXBP unc-18 SEC1 family
PSME_42201.g Belongs to the STXBP unc-18 SEC1 family
PSME_29020.g to Saccharomyces cerevisiae PEP7 (YDR323C)

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000011 vacuole inheritance BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005543 phospholipid binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0006810 transport BP
GO:0006887 exocytosis BP
GO:0006892 post-Golgi vesicle-mediated transport BP
GO:0006895 Golgi to endosome transport BP
GO:0006896 Golgi to vacuole transport BP
GO:0006897 endocytosis BP
GO:0006904 vesicle docking involved in exocytosis BP
GO:0006906 vesicle fusion BP
GO:0006996 organelle organization BP
GO:0007033 vacuole organization BP
GO:0007034 vacuolar transport BP
GO:0008150 biological_process BP
GO:0008289 lipid binding MF
GO:0009987 cellular process BP
GO:0010008 endosome membrane CC
GO:0010009 cytoplasmic side of endosome membrane CC
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016050 vesicle organization BP
GO:0016192 vesicle-mediated transport BP
GO:0016482 cytosolic transport BP
GO:0017016 small GTPase binding MF
GO:0017137 small GTPase binding MF
GO:0019899 enzyme binding MF
GO:0022406 membrane docking BP
GO:0031090 organelle membrane CC
GO:0031267 small GTPase binding MF
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0032266 phosphatidylinositol-3-phosphate binding MF
GO:0032940 secretion by cell BP
GO:0034058 endosomal vesicle fusion BP
GO:0035091 phosphatidylinositol binding MF
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044440 obsolete endosomal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046903 secretion BP
GO:0046907 intracellular transport BP
GO:0048193 Golgi vesicle transport BP
GO:0048278 vesicle docking BP
GO:0048284 organelle fusion BP
GO:0048308 organelle inheritance BP
GO:0051020 GTPase binding MF
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0061024 membrane organization BP
GO:0061025 membrane fusion BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090174 organelle membrane fusion BP
GO:0097708 intracellular vesicle CC
GO:0098552 side of membrane CC
GO:0098562 cytoplasmic side of membrane CC
GO:0098588 bounding membrane of organelle CC
GO:0098657 import into cell BP
GO:0098805 membrane CC
GO:0140029 exocytic process BP
GO:0140056 organelle localization by membrane tethering BP
GO:1901981 phosphatidylinositol phosphate binding MF
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.