Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_31248.g
Position
jcf7190000297226:15030-30405 (-)
15375bp
Gene Type
gene
Gene Description (Protein Product)
to Saccharomyces cerevisiae DYN1 (YKR054C)
Organism
Pseudotsuga menziesii
Also AS AT1G07030

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_35551.g Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome
PSME_38088.g to Saccharomyces cerevisiae SWE1 (YJL187C)
PSME_40714.g serine threonine-protein phosphatase

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000070 mitotic sister chromatid segregation BP
GO:0000132 establishment of mitotic spindle orientation BP
GO:0000166 nucleotide binding MF
GO:0000226 microtubule cytoskeleton organization BP
GO:0000235 astral microtubule CC
GO:0000278 mitotic cell cycle BP
GO:0000280 nuclear division BP
GO:0000741 karyogamy BP
GO:0000742 karyogamy involved in conjugation with cellular fusion BP
GO:0000746 obsolete conjugation BP
GO:0000747 conjugation with cellular fusion BP
GO:0000819 sister chromatid segregation BP
GO:0001411 hyphal tip CC
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003774 cytoskeletal motor activity MF
GO:0003777 microtubule motor activity MF
GO:0003824 catalytic activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005524 ATP binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005815 microtubule organizing center CC
GO:0005816 spindle pole body CC
GO:0005818 aster CC
GO:0005819 spindle CC
GO:0005856 cytoskeleton CC
GO:0005868 cytoplasmic dynein complex CC
GO:0005874 microtubule CC
GO:0005875 microtubule associated complex CC
GO:0005876 spindle microtubule CC
GO:0005881 cytoplasmic microtubule CC
GO:0005938 cell cortex CC
GO:0006810 transport BP
GO:0006928 obsolete movement of cell or subcellular component BP
GO:0006996 organelle organization BP
GO:0006997 nucleus organization BP
GO:0007010 cytoskeleton organization BP
GO:0007017 microtubule-based process BP
GO:0007018 microtubule-based movement BP
GO:0007049 cell cycle BP
GO:0007059 chromosome segregation BP
GO:0007080 mitotic metaphase plate congression BP
GO:0007097 nuclear migration BP
GO:0007127 meiosis I BP
GO:0007129 homologous chromosome pairing at meiosis BP
GO:0007163 establishment or maintenance of cell polarity BP
GO:0007275 multicellular organism development BP
GO:0008017 microtubule binding MF
GO:0008092 cytoskeletal protein binding MF
GO:0008144 obsolete drug binding MF
GO:0008150 biological_process BP
GO:0008569 minus-end-directed microtubule motor activity MF
GO:0008608 attachment of spindle microtubules to kinetochore BP
GO:0009987 cellular process BP
GO:0010970 transport along microtubule BP
GO:0015630 microtubule cytoskeleton CC
GO:0015631 tubulin binding MF
GO:0016043 cellular component organization BP
GO:0016462 pyrophosphatase activity MF
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0016887 ATP hydrolysis activity MF
GO:0017076 purine nucleotide binding MF
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0019953 sexual reproduction BP
GO:0022402 cell cycle process BP
GO:0022414 reproductive process BP
GO:0030010 establishment of cell polarity BP
GO:0030154 cell differentiation BP
GO:0030286 dynein complex CC
GO:0030427 site of polarized growth CC
GO:0030428 cell septum CC
GO:0030473 nuclear migration along microtubule BP
GO:0030554 adenyl nucleotide binding MF
GO:0030705 cytoskeleton-dependent intracellular transport BP
GO:0030863 cortical cytoskeleton CC
GO:0030981 cortical microtubule cytoskeleton CC
GO:0030989 dynein-driven meiotic oscillatory nuclear movement BP
GO:0031122 cytoplasmic microtubule organization BP
GO:0031134 sister chromatid biorientation BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032553 ribonucleotide binding MF
GO:0032555 purine ribonucleotide binding MF
GO:0032559 adenyl ribonucleotide binding MF
GO:0032991 protein-containing complex CC
GO:0035639 purine ribonucleoside triphosphate binding MF
GO:0035974 meiotic spindle pole body CC
GO:0036094 small molecule binding MF
GO:0040001 establishment of mitotic spindle localization BP
GO:0042623 ATP hydrolysis activity MF
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043226 organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044448 obsolete cell cortex part CC
GO:0044464 obsolete cell part CC
GO:0044703 multi-organism reproductive process BP
GO:0044764 obsolete multi-organism cellular process BP
GO:0045132 meiotic chromosome segregation BP
GO:0045143 homologous chromosome segregation BP
GO:0045503 dynein light chain binding MF
GO:0045505 dynein intermediate chain binding MF
GO:0046907 intracellular transport BP
GO:0047496 vesicle transport along microtubule BP
GO:0048284 organelle fusion BP
GO:0048285 organelle fission BP
GO:0048468 cell development BP
GO:0048608 reproductive structure development BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050000 chromosome localization BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051276 chromosome organization BP
GO:0051286 cell tip CC
GO:0051293 establishment of spindle localization BP
GO:0051294 establishment of spindle orientation BP
GO:0051303 establishment of chromosome localization BP
GO:0051310 metaphase plate congression BP
GO:0051315 attachment of mitotic spindle microtubules to kinetochore BP
GO:0051321 meiotic cell cycle BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051647 nucleus localization BP
GO:0051648 vesicle localization BP
GO:0051649 establishment of localization in cell BP
GO:0051650 establishment of vesicle localization BP
GO:0051653 spindle localization BP
GO:0051656 establishment of organelle localization BP
GO:0051704 obsolete multi-organism process BP
GO:0051959 dynein light intermediate chain binding MF
GO:0061458 reproductive system development BP
GO:0061982 meiosis I cell cycle process BP
GO:0070192 chromosome organization involved in meiotic cell cycle BP
GO:0070787 conidiophore development BP
GO:0070789 metula development BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0072382 minus-end-directed vesicle transport along microtubule BP
GO:0072384 organelle transport along microtubule BP
GO:0072385 minus-end-directed organelle transport along microtubule BP
GO:0072687 meiotic spindle CC
GO:0075259 spore-bearing structure development BP
GO:0097159 organic cyclic compound binding MF
GO:0097367 carbohydrate derivative binding MF
GO:0097435 supramolecular fiber organization BP
GO:0098813 nuclear chromosome segregation BP
GO:0099080 supramolecular complex CC
GO:0099081 supramolecular polymer CC
GO:0099111 microtubule-based transport BP
GO:0099512 supramolecular fiber CC
GO:0099513 polymeric cytoskeletal fiber CC
GO:0099518 vesicle cytoskeletal trafficking BP
GO:0099568 cytoplasmic region CC
GO:0140013 meiotic nuclear division BP
GO:0140014 mitotic nuclear division BP
GO:1901265 nucleoside phosphate binding MF
GO:1901363 heterocyclic compound binding MF
GO:1902494 catalytic complex CC
GO:1902850 microtubule cytoskeleton organization involved in mitosis BP
GO:1903046 meiotic cell cycle process BP
GO:1903047 mitotic cell cycle process BP
GO:1990574 meiotic spindle astral microtubule CC
GO:1990758 mitotic sister chromatid biorientation BP
GO:1990939 microtubule motor activity MF
KEGG Term Name Description
map04145 Phagosome Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.