Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_45059.g
Position
jcf7190000158855:1859-5000 (+)
3141bp
Gene Type
gene
Gene Description (Protein Product)
to Saccharomyces cerevisiae ZRC1 (YMR243C) and COT1 (YOR316C)
Organism
Pseudotsuga menziesii
Also AS AT1G29965

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_49224.g Histone H3.3-like
PSME_45866.g Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
PSME_45059.g to Saccharomyces cerevisiae ZRC1 (YMR243C) and COT1 (YOR316C)

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000041 transition metal ion transport BP
GO:0000322 storage vacuole CC
GO:0000323 lytic vacuole CC
GO:0000324 fungal-type vacuole CC
GO:0000329 fungal-type vacuole membrane CC
GO:0003674 molecular_function MF
GO:0005215 transporter activity MF
GO:0005385 zinc ion transmembrane transporter activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005773 vacuole CC
GO:0005774 vacuolar membrane CC
GO:0005783 endoplasmic reticulum CC
GO:0005789 endoplasmic reticulum membrane CC
GO:0006810 transport BP
GO:0006811 monoatomic ion transport BP
GO:0006812 monoatomic cation transport BP
GO:0006824 cobalt ion transport BP
GO:0006829 zinc ion transport BP
GO:0006873 intracellular monoatomic ion homeostasis BP
GO:0006875 obsolete intracellular metal ion homeostasis BP
GO:0006877 intracellular cobalt ion homeostasis BP
GO:0006882 intracellular zinc ion homeostasis BP
GO:0006950 response to stress BP
GO:0008150 biological_process BP
GO:0008324 monoatomic cation transmembrane transporter activity MF
GO:0009636 response to toxic substance BP
GO:0009987 cellular process BP
GO:0010035 response to inorganic substance BP
GO:0010038 response to metal ion BP
GO:0010043 response to zinc ion BP
GO:0012505 endomembrane system CC
GO:0015075 monoatomic ion transmembrane transporter activity MF
GO:0015087 cobalt ion transmembrane transporter activity MF
GO:0015318 inorganic molecular entity transmembrane transporter activity MF
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0019725 cellular homeostasis BP
GO:0022857 transmembrane transporter activity MF
GO:0022890 inorganic cation transmembrane transporter activity MF
GO:0030001 metal ion transport BP
GO:0030003 intracellular monoatomic cation homeostasis BP
GO:0031090 organelle membrane CC
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031984 organelle subcompartment CC
GO:0032879 regulation of localization BP
GO:0034220 monoatomic ion transmembrane transport BP
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network CC
GO:0042221 response to chemical BP
GO:0042592 homeostatic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044432 obsolete endoplasmic reticulum part CC
GO:0044437 obsolete vacuolar part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046686 response to cadmium ion BP
GO:0046873 metal ion transmembrane transporter activity MF
GO:0046915 transition metal ion transmembrane transporter activity MF
GO:0046916 obsolete intracellular transition metal ion homeostasis BP
GO:0048878 chemical homeostasis BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050801 monoatomic ion homeostasis BP
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051716 cellular response to stimulus BP
GO:0055065 obsolete metal ion homeostasis BP
GO:0055068 cobalt ion homeostasis BP
GO:0055069 obsolete zinc ion homeostasis BP
GO:0055076 obsolete transition metal ion homeostasis BP
GO:0055080 monoatomic cation homeostasis BP
GO:0055082 intracellular chemical homeostasis BP
GO:0055085 transmembrane transport BP
GO:0061088 regulation of sequestering of zinc ion BP
GO:0061687 detoxification of inorganic compound BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070838 metal ion transport BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071241 cellular response to inorganic substance BP
GO:0071248 cellular response to metal ion BP
GO:0071276 cellular response to cadmium ion BP
GO:0071577 zinc ion transmembrane transport BP
GO:0071585 detoxification of cadmium ion BP
GO:0072503 obsolete cellular divalent inorganic cation homeostasis BP
GO:0072507 obsolete divalent inorganic cation homeostasis BP
GO:0072509 inorganic cation transmembrane transporter activity MF
GO:0072511 inorganic cation transmembrane transport BP
GO:0097237 cellular response to toxic substance BP
GO:0097501 stress response to metal ion BP
GO:0098588 bounding membrane of organelle CC
GO:0098655 monoatomic cation transmembrane transport BP
GO:0098660 inorganic ion transmembrane transport BP
GO:0098662 inorganic cation transmembrane transport BP
GO:0098754 detoxification BP
GO:0098771 inorganic ion homeostasis BP
GO:0098805 membrane CC
GO:0098827 endoplasmic reticulum subcompartment CC
GO:0098849 cellular detoxification of cadmium ion BP
GO:0098852 lytic vacuole membrane CC
GO:1990170 stress response to cadmium ion BP
GO:1990748 cellular detoxification BP