PPGR - Gene Detail

Basic Information

Gene ID	PSME_46936.g
Position	jcf7190000447350:8884-11107 (+) 2223bp
Gene Type	gene
Gene Description (Protein Product)	to Saccharomyces cerevisiae OMA1 (YKR087C)
Organism	Pseudotsuga menziesii
Also AS	AT5G51740

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

PSME_46936.g to Saccharomyces cerevisiae OMA1 (YKR087C)

PSME_50603.g Belongs to the histone deacetylase family. HD Type 1 subfamily

PSME_50320.g NAD-dependent histone deacetylase activity (H3-K14 specific)

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004175	endopeptidase activity	MF
GO:0004222	metalloendopeptidase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005740	mitochondrial envelope	CC
GO:0005743	mitochondrial inner membrane	CC
GO:0006508	proteolysis	BP
GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007005	mitochondrion organization	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008233	peptidase activity	MF
GO:0008237	metallopeptidase activity	MF
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009987	cellular process	BP
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016787	hydrolase activity	MF
GO:0019538	protein metabolic process	BP
GO:0019866	organelle inner membrane	CC
GO:0023052	signaling	BP
GO:0030163	protein catabolic process	BP
GO:0031090	organelle membrane	CC
GO:0031929	TOR signaling	BP
GO:0031966	mitochondrial membrane	CC
GO:0031967	organelle envelope	CC
GO:0031975	envelope	CC
GO:0035556	intracellular signal transduction	BP
GO:0035694	mitochondrial protein catabolic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044257	protein catabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044429	obsolete mitochondrial part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051603	proteolysis involved in protein catabolic process	BP
GO:0051716	cellular response to stimulus	BP
GO:0065007	biological regulation	BP
GO:0070011	peptidase activity	MF
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901575	organic substance catabolic process	BP