PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	PSME_49998.g
Position	jcf7190000025354:141946-143996 (-) 2050bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the actin family
Organism	Pseudotsuga menziesii
Also AS	AT5G09810

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	PSME_50865.g Belongs to the actin-binding proteins ADF family PSME_49998.g Belongs to the actin family PSME_50740.g Belongs to the syntaxin family
Regulatory gene	PSME_03590.g Myb-like DNA-binding domain PSME_05009.g transcription factor PSME_05954.g DnaJ homolog, subfamily C, member

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000287	magnesium ion binding	MF
GO:0001725	stress fiber	CC
GO:0003674	molecular_function	MF
GO:0003779	actin binding	MF
GO:0003785	actin monomer binding	MF
GO:0005488	binding	MF
GO:0005509	calcium ion binding	MF
GO:0005515	protein binding	MF
GO:0005523	tropomyosin binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005856	cytoskeleton	CC
GO:0005858	axonemal dynein complex	CC
GO:0005865	striated muscle thin filament	CC
GO:0005875	microtubule associated complex	CC
GO:0005884	actin filament	CC
GO:0005929	cilium	CC
GO:0005930	axoneme	CC
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007015	actin filament organization	BP
GO:0007275	multicellular organism development	BP
GO:0007517	muscle organ development	BP
GO:0007519	skeletal muscle tissue development	BP
GO:0008092	cytoskeletal protein binding	MF
GO:0008150	biological_process	BP
GO:0008154	actin polymerization or depolymerization	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009887	animal organ morphogenesis	BP
GO:0009888	tissue development	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010468	regulation of gene expression	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010628	positive regulation of gene expression	BP
GO:0010927	cellular component assembly involved in morphogenesis	BP
GO:0014706	striated muscle tissue development	BP
GO:0014866	skeletal myofibril assembly	BP
GO:0014902	myotube differentiation	BP
GO:0014904	myotube cell development	BP
GO:0015629	actin cytoskeleton	CC
GO:0015630	microtubule cytoskeleton	CC
GO:0016043	cellular component organization	BP
GO:0017022	myosin binding	MF
GO:0019222	regulation of metabolic process	BP
GO:0019904	protein domain specific binding	MF
GO:0022607	cellular component assembly	BP
GO:0030016	myofibril	CC
GO:0030017	sarcomere	CC
GO:0030027	lamellipodium	CC
GO:0030029	actin filament-based process	BP
GO:0030036	actin cytoskeleton organization	BP
GO:0030041	actin filament polymerization	BP
GO:0030154	cell differentiation	BP
GO:0030175	filopodium	CC
GO:0030239	myofibril assembly	BP
GO:0030240	skeletal muscle thin filament assembly	BP
GO:0030286	dynein complex	CC
GO:0031013	troponin I binding	MF
GO:0031032	actomyosin structure organization	BP
GO:0031252	cell leading edge	CC
GO:0031432	titin binding	MF
GO:0031941	filamentous actin	CC
GO:0032036	myosin heavy chain binding	MF
GO:0032432	actin filament bundle	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032781	positive regulation of ATP-dependent activity	BP
GO:0032838	plasma membrane bounded cell projection cytoplasm	CC
GO:0032989	cellular component morphogenesis	BP
GO:0032991	protein-containing complex	CC
GO:0034622	protein-containing complex assembly	BP
GO:0036156	inner dynein arm	CC
GO:0036379	myofilament	CC
GO:0042641	actomyosin	CC
GO:0042692	muscle cell differentiation	BP
GO:0042802	identical protein binding	MF
GO:0042995	cell projection	CC
GO:0043085	positive regulation of catalytic activity	BP
GO:0043167	ion binding	MF
GO:0043169	cation binding	MF
GO:0043226	organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043292	contractile fiber	CC
GO:0043462	regulation of ATP-dependent activity	BP
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044093	positive regulation of molecular function	BP
GO:0044297	cell body	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044430	obsolete cytoskeletal part	CC
GO:0044441	obsolete ciliary part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044447	obsolete axoneme part	CC
GO:0044449	obsolete contractile fiber part	CC
GO:0044463	obsolete cell projection part	CC
GO:0044464	obsolete cell part	CC
GO:0046872	metal ion binding	MF
GO:0048306	calcium-dependent protein binding	MF
GO:0048468	cell development	BP
GO:0048513	animal organ development	BP
GO:0048518	positive regulation of biological process	BP
GO:0048646	anatomical structure formation involved in morphogenesis	BP
GO:0048729	tissue morphogenesis	BP
GO:0048731	system development	BP
GO:0048741	skeletal muscle fiber development	BP
GO:0048747	muscle cell development	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0051017	actin filament bundle assembly	BP
GO:0051146	striated muscle cell differentiation	BP
GO:0051258	protein polymerization	BP
GO:0051336	regulation of hydrolase activity	BP
GO:0051345	positive regulation of hydrolase activity	BP
GO:0055001	muscle cell development	BP
GO:0055002	striated muscle cell development	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060485	mesenchyme development	BP
GO:0060537	muscle tissue development	BP
GO:0060538	skeletal muscle organ development	BP
GO:0061061	muscle structure development	BP
GO:0061572	actin filament bundle organization	BP
GO:0065003	protein-containing complex assembly	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070925	organelle assembly	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0072132	mesenchyme morphogenesis	BP
GO:0090130	tissue migration	BP
GO:0090131	mesenchyme migration	BP
GO:0097014	ciliary plasm	CC
GO:0097435	supramolecular fiber organization	BP
GO:0097517	contractile actin filament bundle	CC
GO:0098723	skeletal muscle myofibril	CC
GO:0098858	actin-based cell projection	CC
GO:0099080	supramolecular complex	CC
GO:0099081	supramolecular polymer	CC
GO:0099512	supramolecular fiber	CC
GO:0099513	polymeric cytoskeletal fiber	CC
GO:0099568	cytoplasmic region	CC
GO:0120025	plasma membrane bounded cell projection	CC
GO:0120038	obsolete plasma membrane bounded cell projection part	CC
GO:1902494	catalytic complex	CC
GO:1904621	obsolete regulation of microfilament motor activity	BP
GO:1904623	obsolete positive regulation of microfilament motor activity	BP

KEGG Term	Name	Description
map04145	Phagosome	Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.