Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC103944469
View in Genome Browser
Position
NW_025999413.1:5200272-5203242 (+)
2970bp
Gene Type
gene
Gene Description (Protein Product)
Protein THYLAKOID FORMATION1
Organism
Pyrus x bretschneideri
Also AS MD09G1097200AT2G20890

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC103952890 Guanine nucleotide-binding protein alpha-1
gene-LOC103967857 Outer envelope protein 80
gene-LOC103963393 Outer envelope protein 80
Regulatory gene
gene-LOC103926744 lysine-specific demethylase
gene-LOC103927195 Dof zinc finger protein
gene-LOC103927829 ZINC FINGER protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0006091 generation of precursor metabolites and energy BP
GO:0006605 protein targeting BP
GO:0006612 protein targeting to membrane BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006778 porphyrin-containing compound metabolic process BP
GO:0006787 porphyrin-containing compound catabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006996 organelle organization BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009507 chloroplast CC
GO:0009526 plastid envelope CC
GO:0009527 plastid outer membrane CC
GO:0009528 plastid inner membrane CC
GO:0009532 plastid stroma CC
GO:0009534 chloroplast thylakoid CC
GO:0009535 chloroplast thylakoid membrane CC
GO:0009536 plastid CC
GO:0009570 chloroplast stroma CC
GO:0009579 thylakoid CC
GO:0009657 plastid organization BP
GO:0009668 plastid membrane organization BP
GO:0009707 chloroplast outer membrane CC
GO:0009743 response to carbohydrate BP
GO:0009756 carbohydrate mediated signaling BP
GO:0009889 regulation of biosynthetic process BP
GO:0009941 chloroplast envelope CC
GO:0009987 cellular process BP
GO:0010027 thylakoid membrane organization BP
GO:0010033 response to organic substance BP
GO:0010119 regulation of stomatal movement BP
GO:0010182 sugar mediated signaling pathway BP
GO:0010207 photosystem II assembly BP
GO:0010319 stromule CC
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0015979 photosynthesis BP
GO:0015994 chlorophyll metabolic process BP
GO:0015996 chlorophyll catabolic process BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0017038 protein import BP
GO:0019222 regulation of metabolic process BP
GO:0019439 aromatic compound catabolic process BP
GO:0019684 photosynthesis, light reaction BP
GO:0019866 organelle inner membrane CC
GO:0019867 outer membrane CC
GO:0022607 cellular component assembly BP
GO:0023052 signaling BP
GO:0031090 organelle membrane CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031967 organelle envelope CC
GO:0031968 organelle outer membrane CC
GO:0031969 chloroplast membrane CC
GO:0031975 envelope CC
GO:0031976 plastid thylakoid CC
GO:0031984 organelle subcompartment CC
GO:0033013 tetrapyrrole metabolic process BP
GO:0033015 tetrapyrrole catabolic process BP
GO:0033036 macromolecule localization BP
GO:0033365 protein localization to organelle BP
GO:0034357 photosynthetic membrane CC
GO:0034613 protein localization BP
GO:0034622 protein-containing complex assembly BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0042170 plastid membrane CC
GO:0042221 response to chemical BP
GO:0042440 pigment metabolic process BP
GO:0042651 thylakoid membrane CC
GO:0042886 amide transport BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044270 cellular nitrogen compound catabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044436 obsolete thylakoid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044743 protein transmembrane import into intracellular organelle BP
GO:0045036 protein targeting to chloroplast BP
GO:0045037 protein import into chloroplast stroma BP
GO:0045038 protein import into chloroplast thylakoid membrane BP
GO:0045184 establishment of protein localization BP
GO:0046149 pigment catabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046700 heterocycle catabolic process BP
GO:0046907 intracellular transport BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051186 obsolete cofactor metabolic process BP
GO:0051187 obsolete cofactor catabolic process BP
GO:0051234 establishment of localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0051716 cellular response to stimulus BP
GO:0055035 plastid thylakoid membrane CC
GO:0055085 transmembrane transport BP
GO:0061024 membrane organization BP
GO:0065002 intracellular protein transmembrane transport BP
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0070727 cellular macromolecule localization BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071310 cellular response to organic substance BP
GO:0071322 cellular response to carbohydrate stimulus BP
GO:0071702 organic substance transport BP
GO:0071704 organic substance metabolic process BP
GO:0071705 nitrogen compound transport BP
GO:0071806 protein transmembrane transport BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072594 establishment of protein localization to organelle BP
GO:0072596 establishment of protein localization to chloroplast BP
GO:0072598 protein localization to chloroplast BP
GO:0072657 protein localization to membrane BP
GO:0080134 regulation of response to stress BP
GO:0090150 establishment of protein localization to membrane BP
GO:0098588 bounding membrane of organelle CC
GO:0098805 membrane CC
GO:1901360 organic cyclic compound metabolic process BP
GO:1901361 organic cyclic compound catabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1901700 response to oxygen-containing compound BP
GO:1901701 cellular response to oxygen-containing compound BP
GO:1902456 regulation of stomatal opening BP
GO:1902458 positive regulation of stomatal opening BP
GO:1903426 regulation of reactive oxygen species biosynthetic process BP
GO:2000070 regulation of response to water deprivation BP
GO:2000377 regulation of reactive oxygen species metabolic process BP