PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	QL11p050624.g View in Genome Browser
Position	chr11:50621892-50627038 (+) 5146bp
Gene Type	gene
Gene Description (Protein Product)	Pre-mRNA-splicing factor
Organism	Quercus lobata
Also AS	AT2G16860

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	QL12p022157.g Small nuclear ribonucleoprotein QL12p002363.g pre-mRNA-splicing factor ISY1 homolog QL12p003635.g Small nuclear ribonucleoprotein
Regulatory gene	QL02p010920.g Protein BASIC PENTACYSTEINE6-like QL03p039222.g Protein BASIC PENTACYSTEINE2-like QL10p033513.g GAGA binding protein-like family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.