Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
QL11p050879.g
View in Genome Browser
Position
chr11:50876657-50881878 (-)
5221bp
Gene Type
gene
Gene Description (Protein Product)
Pre-mRNA-splicing factor
Organism
Quercus lobata
Also AS AT2G16860

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
QL12p022157.g Small nuclear ribonucleoprotein
QL12p002363.g pre-mRNA-splicing factor ISY1 homolog
QL12p028476.g Small nuclear ribonucleoprotein
Regulatory gene
QL01p012484.g Protein TRANSPARENT TESTA
QL01p014958.g Protein SENSITIVE TO PROTON RHIZOTOXICITY
QL01p014984.g ZINC FINGER protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.