PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	QL93p0196_0012.g View in Genome Browser
Position	Scq3eQI_196:9346-14523 (+) 5177bp
Gene Type	gene
Gene Description (Protein Product)	Tryptophan synthase beta chain
Organism	Quercus lobata
Also AS	AT5G28237

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	QL93p0869_0065.g Interconversion of serine and glycine QL93p1879_0003.g Interconversion of serine and glycine QL93p0196_0012.g Tryptophan synthase beta chain
Regulatory gene	QL01p023780.g B3 domain-containing protein QL01p024575.g B3 domain-containing transcription repressor QL01p032408.g Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00400	Phenylalanine, tyrosine and tryptophan biosynthesis	-
map00260	Glycine, serine and threonine metabolism	Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].