Basic Information
Gene ID
gene-IMY05_003G0036600
Position
CM029801.1:4323461-4326760 (+)
3299bp
Gene Type
gene
Gene Description (Protein Product)
U6 snRNA-associated Sm-like protein
Organism
Also AS AT3G14080

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C1888002300 U6 snRNA-associated Sm-like protein
gene-IMY05_008G0065900 U6 snRNA-associated Sm-like protein
gene-IMY05_016G0181900 Component of LSM protein complexes, which are involved in RNA processing
Regulatory gene
gene-IMY05_001G0065700 Dof domain, zinc finger
gene-IMY05_001G0068000 Dof domain, zinc finger
gene-IMY05_001G0136200 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.