PPGR - Gene Detail

Basic Information

Gene ID	gene-IMY05_016G0027000 View in Genome Browser
Position	CM029814.1:1886209-1890461 (-) 4252bp
Gene Type	gene
Gene Description (Protein Product)	Ribonuclease P protein subunit
Organism	Salix suchowensis
Also AS	AT2G43190

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-IMY05_019G0047900 Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1

gene-IMY05_019G0045700 Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1

gene-IMY05_017G0115900 Proteinaceous RNase P 1, chloroplastic

Regulatory gene

gene-IMY05_001G0018600 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

gene-IMY05_001G0019700 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

gene-IMY05_001G0028100 Zinc finger protein

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000172	ribonuclease MRP complex	CC
GO:0000966	RNA 5'-end processing	BP
GO:0001682	tRNA 5'-leader removal	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006364	rRNA processing	BP
GO:0006396	RNA processing	BP
GO:0006399	tRNA metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008033	tRNA processing	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0016070	RNA metabolic process	BP
GO:0016072	rRNA metabolic process	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0030677	ribonuclease P complex	CC
GO:0030681	multimeric ribonuclease P complex	CC
GO:0032991	protein-containing complex	CC
GO:0033204	ribonuclease P RNA binding	MF
GO:0034470	ncRNA processing	BP
GO:0034471	ncRNA 5'-end processing	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0042254	ribosome biogenesis	BP
GO:0043170	macromolecule metabolic process	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0099116	tRNA 5'-end processing	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1902494	catalytic complex	CC
GO:1902555	endoribonuclease complex	CC
GO:1905348	endonuclease complex	CC
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map03008	Ribosome biogenesis in eukaryotes	Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.