PPGR - Gene Detail

Basic Information

Gene ID	gene-IMY05_018G0059000 View in Genome Browser
Position	CM029816.1:7087064-7091282 (-) 4218bp
Gene Type	gene
Gene Description (Protein Product)	ARF guanine-nucleotide exchange factor
Organism	Salix suchowensis
Also AS	AT5G19610

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-IMY05_C4431000100 ARF-like small GTPases; ARF, ADP-ribosylation factor

gene-IMY05_C4790000100 ARF-like small GTPases; ARF, ADP-ribosylation factor

gene-IMY05_C1888002800 Ras-related protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0003674	molecular_function	MF
GO:0005085	guanyl-nucleotide exchange factor activity	MF
GO:0005086	guanyl-nucleotide exchange factor activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005794	Golgi apparatus	CC
GO:0005802	trans-Golgi network	CC
GO:0005829	cytosol	CC
GO:0006810	transport	BP
GO:0008150	biological_process	BP
GO:0009846	pollen germination	BP
GO:0009856	pollination	BP
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0016192	vesicle-mediated transport	BP
GO:0019899	enzyme binding	MF
GO:0022414	reproductive process	BP
GO:0031984	organelle subcompartment	CC
GO:0032501	multicellular organismal process	BP
GO:0042995	cell projection	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044431	obsolete Golgi apparatus part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044706	multi-multicellular organism process	BP
GO:0051020	GTPase binding	MF
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051704	obsolete multi-organism process	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0090406	pollen tube	CC
GO:0098772	molecular function regulator activity	MF
GO:0098791	Golgi apparatus subcompartment	CC
GO:0120025	plasma membrane bounded cell projection	CC

KEGG Term	Name	Description
map04144	Endocytosis	Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.