Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_C4192001000
View in Genome Browser
Position
JAEQKX010000575.1:40505-42664 (-)
2159bp
Gene Type
gene
Gene Description (Protein Product)
ARM repeat-containing protein
Organism
Salix suchowensis
Also AS AT3G25800

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C4736000100 phosphatase 2A regulatory
gene-IMY05_C4494000600 Serine threonine-protein phosphatase
gene-IMY05_C5047000400 The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000075 cell cycle checkpoint signaling BP
GO:0000159 protein phosphatase type 2A complex CC
GO:0000278 mitotic cell cycle BP
GO:0000910 cytokinesis BP
GO:0003674 molecular_function MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005815 microtubule organizing center CC
GO:0005816 spindle pole body CC
GO:0005826 actomyosin contractile ring CC
GO:0005856 cytoskeleton CC
GO:0005933 cellular bud CC
GO:0005934 cellular bud tip CC
GO:0005935 cellular bud neck CC
GO:0005937 mating projection CC
GO:0005938 cell cortex CC
GO:0006417 regulation of translation BP
GO:0006996 organelle organization BP
GO:0007010 cytoskeleton organization BP
GO:0007049 cell cycle BP
GO:0007088 regulation of mitotic nuclear division BP
GO:0007093 mitotic cell cycle checkpoint signaling BP
GO:0007094 mitotic spindle assembly checkpoint signaling BP
GO:0007096 regulation of exit from mitosis BP
GO:0007163 establishment or maintenance of cell polarity BP
GO:0007346 regulation of mitotic cell cycle BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008287 protein serine/threonine phosphatase complex CC
GO:0009889 regulation of biosynthetic process BP
GO:0009966 regulation of signal transduction BP
GO:0009968 negative regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010564 regulation of cell cycle process BP
GO:0010608 post-transcriptional regulation of gene expression BP
GO:0010639 negative regulation of organelle organization BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0010921 regulation of phosphatase activity BP
GO:0010948 negative regulation of cell cycle process BP
GO:0010965 regulation of mitotic sister chromatid separation BP
GO:0010974 negative regulation of division septum assembly BP
GO:0015629 actin cytoskeleton CC
GO:0015630 microtubule cytoskeleton CC
GO:0016043 cellular component organization BP
GO:0019208 phosphatase regulator activity MF
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019888 protein phosphatase regulator activity MF
GO:0022402 cell cycle process BP
GO:0023051 regulation of signaling BP
GO:0023057 negative regulation of signaling BP
GO:0030071 regulation of mitotic metaphase/anaphase transition BP
GO:0030234 enzyme regulator activity MF
GO:0030427 site of polarized growth CC
GO:0030863 cortical cytoskeleton CC
GO:0030864 cortical actin cytoskeleton CC
GO:0030952 establishment or maintenance of cytoskeleton polarity BP
GO:0031029 regulation of septation initiation signaling BP
GO:0031030 negative regulation of septation initiation signaling BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031399 regulation of protein modification process BP
GO:0031577 spindle checkpoint signaling BP
GO:0031991 regulation of actomyosin contractile ring contraction BP
GO:0032153 cell division site CC
GO:0032155 obsolete cell division site part CC
GO:0032268 regulation of protein metabolic process BP
GO:0032465 regulation of cytokinesis BP
GO:0032466 negative regulation of cytokinesis BP
GO:0032506 cytokinetic process BP
GO:0032954 regulation of cytokinetic process BP
GO:0032955 regulation of division septum assembly BP
GO:0032956 regulation of actin cytoskeleton organization BP
GO:0032970 regulation of actin filament-based process BP
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0033043 regulation of organelle organization BP
GO:0033044 regulation of chromosome organization BP
GO:0033045 regulation of sister chromatid segregation BP
GO:0033046 negative regulation of sister chromatid segregation BP
GO:0033047 regulation of mitotic sister chromatid segregation BP
GO:0033048 negative regulation of mitotic sister chromatid segregation BP
GO:0033365 protein localization to organelle BP
GO:0034248 regulation of amide metabolic process BP
GO:0034613 protein localization BP
GO:0035303 regulation of dephosphorylation BP
GO:0035304 regulation of protein dephosphorylation BP
GO:0042995 cell projection CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043332 mating projection tip CC
GO:0043666 regulation of phosphoprotein phosphatase activity BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044380 protein localization to cytoskeleton BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044448 obsolete cell cortex part CC
GO:0044463 obsolete cell projection part CC
GO:0044464 obsolete cell part CC
GO:0044732 mitotic spindle pole body CC
GO:0045786 negative regulation of cell cycle BP
GO:0045839 negative regulation of mitotic nuclear division BP
GO:0045841 negative regulation of mitotic metaphase/anaphase transition BP
GO:0045930 negative regulation of mitotic cell cycle BP
GO:0046578 regulation of Ras protein signal transduction BP
GO:0046580 negative regulation of Ras protein signal transduction BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050794 regulation of cellular process BP
GO:0051056 regulation of small GTPase mediated signal transduction BP
GO:0051058 negative regulation of small GTPase mediated signal transduction BP
GO:0051128 regulation of cellular component organization BP
GO:0051129 negative regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051179 localization BP
GO:0051246 regulation of protein metabolic process BP
GO:0051286 cell tip CC
GO:0051301 cell division BP
GO:0051302 regulation of cell division BP
GO:0051336 regulation of hydrolase activity BP
GO:0051493 regulation of cytoskeleton organization BP
GO:0051641 cellular localization BP
GO:0051726 regulation of cell cycle BP
GO:0051782 negative regulation of cell division BP
GO:0051783 regulation of nuclear division BP
GO:0051784 negative regulation of nuclear division BP
GO:0051983 regulation of chromosome segregation BP
GO:0051985 negative regulation of chromosome segregation BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061492 asymmetric protein localization to old or new spindle pole body BP
GO:0061509 asymmetric protein localization to old mitotic spindle pole body BP
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0070727 cellular macromolecule localization BP
GO:0070938 contractile ring CC
GO:0071173 spindle assembly checkpoint signaling BP
GO:0071174 mitotic spindle checkpoint signaling BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0071988 protein localization to spindle pole body BP
GO:0072698 protein localization to microtubule cytoskeleton BP
GO:0080090 regulation of primary metabolic process BP
GO:0090443 FAR/SIN/STRIPAK complex CC
GO:0098772 molecular function regulator activity MF
GO:0099568 cytoplasmic region CC
GO:0110020 regulation of actomyosin structure organization BP
GO:0120025 plasma membrane bounded cell projection CC
GO:0120038 obsolete plasma membrane bounded cell projection part CC
GO:1901891 regulation of cell septum assembly BP
GO:1901892 negative regulation of cell septum assembly BP
GO:1901987 regulation of cell cycle phase transition BP
GO:1901988 negative regulation of cell cycle phase transition BP
GO:1901990 regulation of mitotic cell cycle phase transition BP
GO:1901991 negative regulation of mitotic cell cycle phase transition BP
GO:1902099 regulation of metaphase/anaphase transition of cell cycle BP
GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle BP
GO:1902412 regulation of mitotic cytokinesis BP
GO:1902413 negative regulation of mitotic cytokinesis BP
GO:1902440 protein localization to mitotic spindle pole body BP
GO:1902494 catalytic complex CC
GO:1902531 regulation of intracellular signal transduction BP
GO:1902532 negative regulation of intracellular signal transduction BP
GO:1903047 mitotic cell cycle process BP
GO:1903293 phosphatase complex CC
GO:1903436 regulation of mitotic cytokinetic process BP
GO:1903437 negative regulation of mitotic cytokinetic process BP
GO:1905508 protein localization to microtubule organizing center BP
GO:1905818 regulation of chromosome separation BP
GO:1905819 negative regulation of chromosome separation BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000816 negative regulation of mitotic sister chromatid separation BP
GO:2001251 negative regulation of chromosome organization BP
KEGG Term Name Description
map03015 mRNA surveillance pathway The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.