Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_C4369002400
View in Genome Browser
Position
JAEQKX010000625.1:77350-78806 (-)
1456bp
Gene Type
gene
Gene Description (Protein Product)
Non-repetitive/WGA-negative nucleoporin C-terminal
Organism
Salix suchowensis
Also AS

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C4768000300 Nuclear pore complex scaffold, nucleoporins 186/192/205
gene-IMY05_C4768000400 Nuclear pore complex scaffold, nucleoporins 186/192/205
gene-IMY05_C4698000300 Nucleoporin Nup120/160

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery BP
GO:0000973 post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003682 chromatin binding MF
GO:0003723 RNA binding MF
GO:0005198 structural molecule activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005635 nuclear envelope CC
GO:0005643 nuclear pore CC
GO:0006323 chromosome organization BP
GO:0006325 chromatin organization BP
GO:0006333 chromatin organization BP
GO:0006338 chromatin remodeling BP
GO:0006342 heterochromatin formation BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006403 RNA localization BP
GO:0006405 RNA export from nucleus BP
GO:0006407 rRNA export from nucleus BP
GO:0006606 protein import into nucleus BP
GO:0006611 protein export from nucleus BP
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006913 nucleocytoplasmic transport BP
GO:0006996 organelle organization BP
GO:0006997 nucleus organization BP
GO:0006999 nuclear pore organization BP
GO:0007059 chromosome segregation BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0012505 endomembrane system CC
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0015931 nucleobase-containing compound transport BP
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0016043 cellular component organization BP
GO:0016458 obsolete gene silencing BP
GO:0016584 obsolete nucleosome positioning BP
GO:0017038 protein import BP
GO:0017056 structural constituent of nuclear pore MF
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0022607 cellular component assembly BP
GO:0022613 ribonucleoprotein complex biogenesis BP
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031497 chromatin organization BP
GO:0031503 protein-containing complex localization BP
GO:0031507 heterochromatin formation BP
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0033365 protein localization to organelle BP
GO:0034397 telomere localization BP
GO:0034398 telomere tethering at nuclear periphery BP
GO:0034401 obsolete chromatin organization involved in regulation of transcription BP
GO:0034504 protein localization to nucleus BP
GO:0034613 protein localization BP
GO:0034622 protein-containing complex assembly BP
GO:0034728 nucleosome organization BP
GO:0036228 protein localization to nuclear inner membrane BP
GO:0040029 epigenetic regulation of gene expression BP
GO:0042254 ribosome biogenesis BP
GO:0042886 amide transport BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044611 nuclear pore inner ring CC
GO:0045184 establishment of protein localization BP
GO:0045814 negative regulation of gene expression, epigenetic BP
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0046907 intracellular transport BP
GO:0046931 pore complex assembly BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0050000 chromosome localization BP
GO:0050657 nucleic acid transport BP
GO:0050658 RNA transport BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051029 rRNA transport BP
GO:0051168 nuclear export BP
GO:0051169 nuclear transport BP
GO:0051170 import into nucleus BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051236 establishment of RNA localization BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0051292 nuclear pore complex assembly BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0070727 cellular macromolecule localization BP
GO:0070828 heterochromatin organization BP
GO:0070868 obsolete heterochromatin organization involved in chromatin silencing BP
GO:0070869 heterochromatin formation BP
GO:0071103 DNA conformation change BP
GO:0071166 ribonucleoprotein complex localization BP
GO:0071426 obsolete ribonucleoprotein complex export from nucleus BP
GO:0071428 obsolete rRNA-containing ribonucleoprotein complex export from nucleus BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071824 protein-DNA complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072594 establishment of protein localization to organelle BP
GO:0072657 protein localization to membrane BP
GO:0080090 regulation of primary metabolic process BP
GO:0090435 protein localization to nuclear envelope BP
GO:0097064 ncRNA export from nucleus BP
GO:0097159 organic cyclic compound binding MF
GO:0097549 obsolete chromatin organization involved in negative regulation of transcription BP
GO:1901363 heterocyclic compound binding MF
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1990841 promoter-specific chromatin binding MF
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.