Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_C4422000300
View in Genome Browser
Position
JAEQKX010000651.1:37841-39486 (+)
1645bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the actin family
Organism
Salix suchowensis
Also AS AT1G13180

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C4727000600 Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks
gene-IMY05_C5327000200 Belongs to the actin family
gene-IMY05_C4488000700 Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000001 mitochondrion inheritance BP
GO:0000166 nucleotide binding MF
GO:0000278 mitotic cell cycle BP
GO:0000281 mitotic cytokinesis BP
GO:0000910 cytokinesis BP
GO:0000912 assembly of actomyosin apparatus involved in cytokinesis BP
GO:0000915 actomyosin contractile ring assembly BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005524 ATP binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005856 cytoskeleton CC
GO:0005885 Arp2/3 protein complex CC
GO:0005886 plasma membrane CC
GO:0005938 cell cortex CC
GO:0006810 transport BP
GO:0006897 endocytosis BP
GO:0006996 organelle organization BP
GO:0007005 mitochondrion organization BP
GO:0007010 cytoskeleton organization BP
GO:0007015 actin filament organization BP
GO:0007049 cell cycle BP
GO:0008064 regulation of actin polymerization or depolymerization BP
GO:0008144 obsolete drug binding MF
GO:0008150 biological_process BP
GO:0008154 actin polymerization or depolymerization BP
GO:0009987 cellular process BP
GO:0010638 positive regulation of organelle organization BP
GO:0015629 actin cytoskeleton CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016192 vesicle-mediated transport BP
GO:0017076 purine nucleotide binding MF
GO:0022402 cell cycle process BP
GO:0022607 cellular component assembly BP
GO:0030029 actin filament-based process BP
GO:0030036 actin cytoskeleton organization BP
GO:0030041 actin filament polymerization BP
GO:0030479 actin cortical patch CC
GO:0030554 adenyl nucleotide binding MF
GO:0030832 regulation of actin filament length BP
GO:0030833 regulation of actin filament polymerization BP
GO:0030838 positive regulation of actin filament polymerization BP
GO:0030863 cortical cytoskeleton CC
GO:0030864 cortical actin cytoskeleton CC
GO:0030865 cortical cytoskeleton organization BP
GO:0030866 cortical actin cytoskeleton organization BP
GO:0031032 actomyosin structure organization BP
GO:0031334 positive regulation of protein-containing complex assembly BP
GO:0032153 cell division site CC
GO:0032271 regulation of protein polymerization BP
GO:0032273 positive regulation of protein polymerization BP
GO:0032506 cytokinetic process BP
GO:0032535 regulation of cellular component size BP
GO:0032553 ribonucleotide binding MF
GO:0032555 purine ribonucleotide binding MF
GO:0032559 adenyl ribonucleotide binding MF
GO:0032956 regulation of actin cytoskeleton organization BP
GO:0032970 regulation of actin filament-based process BP
GO:0032991 protein-containing complex CC
GO:0033043 regulation of organelle organization BP
GO:0034314 Arp2/3 complex-mediated actin nucleation BP
GO:0034622 protein-containing complex assembly BP
GO:0035639 purine ribonucleoside triphosphate binding MF
GO:0036094 small molecule binding MF
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043226 organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043254 regulation of protein-containing complex assembly BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044089 positive regulation of cellular component biogenesis BP
GO:0044396 actin cortical patch organization BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044448 obsolete cell cortex part CC
GO:0044464 obsolete cell part CC
GO:0044837 actomyosin contractile ring organization BP
GO:0045010 actin nucleation BP
GO:0048308 organelle inheritance BP
GO:0048311 mitochondrion distribution BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051128 regulation of cellular component organization BP
GO:0051130 positive regulation of cellular component organization BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051258 protein polymerization BP
GO:0051285 cell cortex of cell tip CC
GO:0051286 cell tip CC
GO:0051301 cell division BP
GO:0051493 regulation of cytoskeleton organization BP
GO:0051495 positive regulation of cytoskeleton organization BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051646 mitochondrion localization BP
GO:0051666 actin cortical patch localization BP
GO:0061640 cytoskeleton-dependent cytokinesis BP
GO:0061645 endocytic patch CC
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0090066 regulation of anatomical structure size BP
GO:0097159 organic cyclic compound binding MF
GO:0097367 carbohydrate derivative binding MF
GO:0097435 supramolecular fiber organization BP
GO:0098657 import into cell BP
GO:0099568 cytoplasmic region CC
GO:0099738 cell cortex region CC
GO:0110053 regulation of actin filament organization BP
GO:1901265 nucleoside phosphate binding MF
GO:1901363 heterocyclic compound binding MF
GO:1902407 assembly of actomyosin apparatus involved in mitotic cytokinesis BP
GO:1902410 mitotic cytokinetic process BP
GO:1902903 regulation of supramolecular fiber organization BP
GO:1902905 positive regulation of supramolecular fiber organization BP
GO:1903047 mitotic cell cycle process BP
GO:1903475 mitotic actomyosin contractile ring assembly BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.