Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_C4449000300
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Position
JAEQKX010000662.1:6779-8972 (-)
2193bp
Gene Type
gene
Gene Description (Protein Product)
"Transcription factor TFIID (or TATA-binding protein
Organism
Salix suchowensis
Also AS AT3G13445

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C4930000100 Transcription initiation factor IIB
gene-IMY05_C4860000400 WD40 repeat-like protein
gene-IMY05_C4690000900 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000120 RNA polymerase I transcription regulator complex CC
GO:0000126 transcription factor TFIIIB complex CC
GO:0000428 DNA-directed RNA polymerase complex CC
GO:0000976 transcription cis-regulatory region binding MF
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding MF
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific MF
GO:0000983 RNA polymerase II general transcription initiation factor activity MF
GO:0000988 obsolete transcription factor activity, protein binding MF
GO:0000989 obsolete transcription factor activity, transcription factor binding MF
GO:0000992 RNA polymerase III cis-regulatory region sequence-specific DNA binding MF
GO:0001006 RNA polymerase III type 3 promoter sequence-specific DNA binding MF
GO:0001012 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0001016 RNA polymerase III transcription regulatory region sequence-specific DNA binding MF
GO:0001032 RNA polymerase III type 3 promoter sequence-specific DNA binding MF
GO:0001046 core promoter sequence-specific DNA binding MF
GO:0001047 core promoter sequence-specific DNA binding MF
GO:0001067 transcription regulatory region nucleic acid binding MF
GO:0001075 RNA polymerase II general transcription initiation factor activity MF
GO:0001085 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0001102 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0001134 obsolete transcription regulator recruiting activity MF
GO:0001167 obsolete RNA polymerase I transcription factor activity, sequence-specific DNA binding MF
GO:0001169 obsolete transcription factor activity, RNA polymerase I CORE element sequence-specific binding MF
GO:0001179 RNA polymerase I general transcription initiation factor binding MF
GO:0001186 obsolete RNA polymerase I transcription regulator recruiting activity MF
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003682 chromatin binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003700 DNA-binding transcription factor activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005667 transcription regulator complex CC
GO:0005669 transcription factor TFIID complex CC
GO:0005730 nucleolus CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006351 DNA-templated transcription BP
GO:0006352 DNA-templated transcription initiation BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006356 regulation of transcription by RNA polymerase I BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006360 transcription by RNA polymerase I BP
GO:0006361 transcription initiation at RNA polymerase I promoter BP
GO:0006366 transcription by RNA polymerase II BP
GO:0006367 transcription initiation at RNA polymerase II promoter BP
GO:0006383 transcription by RNA polymerase III BP
GO:0006384 transcription initiation at RNA polymerase III promoter BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008134 transcription factor binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008301 DNA binding, bending MF
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009303 rRNA transcription BP
GO:0009889 regulation of biosynthetic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0015074 DNA integration BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016072 rRNA metabolic process BP
GO:0016591 RNA polymerase II, holoenzyme CC
GO:0018130 heterocycle biosynthetic process BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0022607 cellular component assembly BP
GO:0030880 RNA polymerase complex CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032196 transposition BP
GO:0032774 RNA biosynthetic process BP
GO:0032991 protein-containing complex CC
GO:0033613 DNA-binding transcription factor binding MF
GO:0034622 protein-containing complex assembly BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0034660 ncRNA metabolic process BP
GO:0042790 nucleolar large rRNA transcription by RNA polymerase I BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043565 sequence-specific DNA binding MF
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044212 transcription cis-regulatory region binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044452 obsolete nucleolar part CC
GO:0044464 obsolete cell part CC
GO:0044798 transcription regulator complex CC
GO:0046483 heterocycle metabolic process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051123 RNA polymerase II preinitiation complex assembly BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0055029 nuclear DNA-directed RNA polymerase complex CC
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061695 transferase complex, transferring phosphorus-containing groups CC
GO:0065003 protein-containing complex assembly BP
GO:0065004 protein-DNA complex assembly BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070893 obsolete transposon integration BP
GO:0070897 transcription preinitiation complex assembly BP
GO:0070898 RNA polymerase III preinitiation complex assembly BP
GO:0071704 organic substance metabolic process BP
GO:0071824 protein-DNA complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0090575 RNA polymerase II transcription regulator complex CC
GO:0090576 RNA polymerase III transcription regulator complex CC
GO:0097159 organic cyclic compound binding MF
GO:0097659 nucleic acid-templated transcription BP
GO:0098781 ncRNA transcription BP
GO:0140110 transcription regulator activity MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901576 organic substance biosynthetic process BP
GO:1902494 catalytic complex CC
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1990234 transferase complex CC
GO:1990837 sequence-specific double-stranded DNA binding MF
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP
KEGG Term Name Description
map03022 Basal transcription factors -